Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MMZ59_RS08680 Genome accession   NZ_CP093150
Coordinates   1729281..1729661 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JYY-02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1724281..1734661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS08670 (MMZ59_08670) - 1726004..1726912 (+) 909 WP_048001486.1 trypsin-like serine peptidase -
  MMZ59_RS08675 (MMZ59_08675) - 1727059..1729053 (+) 1995 WP_241511917.1 glycosyltransferase family 39 protein -
  MMZ59_RS08680 (MMZ59_08680) nucA/comI 1729281..1729661 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MMZ59_RS08685 (MMZ59_08685) - 1729805..1730653 (+) 849 WP_017367323.1 STAS domain-containing protein -
  MMZ59_RS08690 (MMZ59_08690) - 1730686..1731228 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  MMZ59_RS08695 (MMZ59_08695) - 1731525..1731968 (+) 444 WP_008343821.1 hypothetical protein -
  MMZ59_RS08700 (MMZ59_08700) lexA 1732016..1732636 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  MMZ59_RS08705 (MMZ59_08705) yneA 1732796..1733107 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  MMZ59_RS08710 (MMZ59_08710) - 1733125..1733772 (+) 648 WP_017359583.1 YneB family resolvase-like protein -
  MMZ59_RS08715 (MMZ59_08715) - 1733842..1734072 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=661945 MMZ59_RS08680 WP_224559893.1 1729281..1729661(+) (nucA/comI) [Bacillus altitudinis strain JYY-02]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=661945 MMZ59_RS08680 WP_224559893.1 1729281..1729661(+) (nucA/comI) [Bacillus altitudinis strain JYY-02]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCAGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556