Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MMZ59_RS05160 Genome accession   NZ_CP093150
Coordinates   1032181..1032759 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain JYY-02     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027181..1037759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ59_RS05140 (MMZ59_05140) - 1027674..1029035 (-) 1362 WP_370539267.1 globin-coupled sensor protein -
  MMZ59_RS05145 (MMZ59_05145) - 1029061..1030593 (-) 1533 WP_241511832.1 FAD-dependent oxidoreductase -
  MMZ59_RS05150 (MMZ59_05150) - 1030736..1031596 (+) 861 WP_050827114.1 SDR family oxidoreductase -
  MMZ59_RS05155 (MMZ59_05155) - 1031655..1031891 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  MMZ59_RS05160 (MMZ59_05160) comK 1032181..1032759 (+) 579 WP_017366958.1 competence protein ComK Regulator
  MMZ59_RS05165 (MMZ59_05165) - 1032903..1034009 (+) 1107 WP_241511833.1 D-TA family PLP-dependent enzyme -
  MMZ59_RS05170 (MMZ59_05170) - 1034311..1034793 (+) 483 WP_007499155.1 hypothetical protein -
  MMZ59_RS05175 (MMZ59_05175) - 1034824..1036263 (-) 1440 WP_171465157.1 PLP-dependent aminotransferase family protein -
  MMZ59_RS05180 (MMZ59_05180) - 1036407..1037576 (+) 1170 WP_048001723.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=661925 MMZ59_RS05160 WP_017366958.1 1032181..1032759(+) (comK) [Bacillus altitudinis strain JYY-02]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=661925 MMZ59_RS05160 WP_017366958.1 1032181..1032759(+) (comK) [Bacillus altitudinis strain JYY-02]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATACGAAGTAACAGGAATTTCCCATAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTTCGAACGAAATTTCAAGACCGACTAGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615