Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG324_RS20770 Genome accession   NZ_CP108512
Coordinates   4566960..4567958 (-) Length   332 a.a.
NCBI ID   WP_327429411.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01236     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4561960..4572958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG324_RS20750 (OG324_20750) - 4562302..4563840 (-) 1539 WP_327429407.1 MFS transporter -
  OG324_RS20755 (OG324_20755) - 4563903..4564940 (+) 1038 WP_327429408.1 YafY family protein -
  OG324_RS20760 (OG324_20760) - 4564918..4565685 (-) 768 WP_327429409.1 glucose 1-dehydrogenase -
  OG324_RS20765 (OG324_20765) - 4565682..4566326 (-) 645 WP_327429410.1 TetR family transcriptional regulator -
  OG324_RS20770 (OG324_20770) rpoS 4566960..4567958 (-) 999 WP_327429411.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG324_RS20775 (OG324_20775) - 4568133..4568663 (+) 531 WP_327429412.1 N-acetyltransferase family protein -
  OG324_RS20780 (OG324_20780) - 4568695..4569501 (-) 807 WP_327429413.1 class III extradiol ring-cleavage dioxygenase -
  OG324_RS20785 (OG324_20785) - 4569642..4570145 (+) 504 WP_327429414.1 MarR family transcriptional regulator -
  OG324_RS20790 (OG324_20790) - 4570329..4571843 (-) 1515 WP_327429415.1 MFS transporter -
  OG324_RS20795 (OG324_20795) - 4572024..4572668 (-) 645 WP_327429416.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37092.85 Da        Isoelectric Point: 5.0475

>NTDB_id=661889 OG324_RS20770 WP_327429411.1 4566960..4567958(-) (rpoS) [Streptomyces sp. NBC_01236]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAAAGAD
ASREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=661889 OG324_RS20770 WP_327429411.1 4566960..4567958(-) (rpoS) [Streptomyces sp. NBC_01236]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTGCGGCCGGGGCGGAC
GCGTCCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGGGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTCGACTCGACACCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAACAGTCGGTCATGACCTTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTGGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364