Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SRT_RS08675 Genome accession   NZ_AP014612
Coordinates   1788392..1789792 (-) Length   466 a.a.
NCBI ID   WP_128833795.1    Uniprot ID   A0A1L7LLI9
Organism   Streptococcus troglodytae strain TKU 31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783392..1794792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS08650 (SRT_17750) - 1783915..1784453 (-) 539 Protein_1694 hypothetical protein -
  SRT_RS08655 (SRT_17760) - 1784520..1785044 (-) 525 WP_128833791.1 transcription repressor NadR -
  SRT_RS08660 (SRT_17770) gltX 1785159..1786616 (-) 1458 WP_128833792.1 glutamate--tRNA ligase -
  SRT_RS08665 (SRT_17780) - 1786905..1787618 (-) 714 WP_128833793.1 TIGR00266 family protein -
  SRT_RS08670 (SRT_17790) - 1787808..1788302 (-) 495 WP_161940049.1 beta-class carbonic anhydrase -
  SRT_RS08675 (SRT_17800) radA 1788392..1789792 (-) 1401 WP_128833795.1 DNA repair protein RadA Machinery gene
  SRT_RS08680 (SRT_17810) - 1789750..1790220 (-) 471 WP_128833796.1 cysteine hydrolase family protein -
  SRT_RS08685 (SRT_17820) - 1790230..1790673 (-) 444 WP_161940050.1 dUTP diphosphatase -
  SRT_RS08690 (SRT_17830) - 1790935..1792011 (+) 1077 WP_223213940.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SRT_RS08695 (SRT_17840) galU 1792013..1792933 (+) 921 WP_128833798.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SRT_RS08700 (SRT_17850) - 1792955..1793626 (-) 672 WP_128833799.1 rhomboid family intramembrane serine protease -
  SRT_RS08705 (SRT_17860) - 1793613..1794149 (-) 537 WP_128833800.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51127.73 Da        Isoelectric Point: 7.1359

>NTDB_id=66188 SRT_RS08675 WP_128833795.1 1788392..1789792(-) (radA) [Streptococcus troglodytae strain TKU 31]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTGEKTRPVKLNQVTSSQV
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=66188 SRT_RS08675 WP_128833795.1 1788392..1789792(-) (radA) [Streptococcus troglodytae strain TKU 31]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTACAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGGTTGAAGTTGCTG
AGGTCAAAAATGCCCGCGTTTCGCTGACAGGCGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGTC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTAGTTCTTATCGG
CGGCGATCCCGGCATTGGGAAATCGACCCTACTTTTGCAAGTTTCAACGCAGTTAGCCAATAAAGGAACTGTTCTTTATG
TTTCTGGTGAAGAATCAGCAGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGCATTCGTGCTGAGATTGAAAAAATTCAGCCTGATTTTTTAATTATTGACTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCTAGCGTTCAAGGTTCTGTTTCTCAGGTGAGAGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACTAATAACATTGCGATCTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTGGCTGGACCGCGAATGTTAGAA
CATATGGTGGATACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCAACCAATGAAATTGGTATTTTTGAAATGAGATCAGGTGGTTTGGTTGAAGTTTTGAATCCCAGCCAAGTCTTTT
TAGAAGAGCGTTTAGATGGGGCTACAGGCTCAGCTATAGTTGTTACCATGGAAGGAACACGACCGATTCTAGCGGAGGTA
CAAGCCTTAGTGACACCGACTGTTTTTGGTAATGCTAAGCGGACAACAACAGGGCTGGATTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGCCTTTTGTTGCAAAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTGCGTT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACAAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTAACAGGCGAAATTCGTCGTGTTAATCGTATTGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTGCCCAAAAATTCTCTGTCAGGTTTAACGATTCCACAGGGTATTCAGGTAATTGGTG
TGACAACGGTCAGTGAAGTTTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7LLI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.044

96.996

0.873
  radA Streptococcus pneumoniae D39

90.044

96.996

0.873
  radA Streptococcus pneumoniae R6

90.044

96.996

0.873
  radA Streptococcus pneumoniae TIGR4

90.044

96.996

0.873
  radA Streptococcus mitis SK321

90.044

96.996

0.873
  radA Streptococcus mitis NCTC 12261

89.823

96.996

0.871
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

97.21

0.607

Multiple sequence alignment