Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG324_RS15820 Genome accession   NZ_CP108512
Coordinates   3438875..3440608 (+) Length   577 a.a.
NCBI ID   WP_327428525.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01236     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3433875..3445608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG324_RS15790 (OG324_15790) - 3433959..3435245 (+) 1287 WP_327428522.1 alkylmercury lyase family protein -
  OG324_RS15810 (OG324_15810) - 3436785..3437090 (+) 306 WP_327428523.1 YtxH domain-containing protein -
  OG324_RS15815 (OG324_15815) - 3437221..3438675 (+) 1455 WP_327428524.1 FGGY family carbohydrate kinase -
  OG324_RS15820 (OG324_15820) rcrP 3438875..3440608 (+) 1734 WP_327428525.1 ABC transporter ATP-binding protein Regulator
  OG324_RS15825 (OG324_15825) rcrQ 3440608..3442536 (+) 1929 WP_327428526.1 ABC transporter ATP-binding protein Regulator
  OG324_RS15830 (OG324_15830) - 3442767..3444131 (-) 1365 WP_327428527.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62700.92 Da        Isoelectric Point: 5.5497

>NTDB_id=661877 OG324_RS15820 WP_327428525.1 3438875..3440608(+) (rcrP) [Streptomyces sp. NBC_01236]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISMAQVVCNIGAVYFGA
RTASAVGRDIRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSTV
LIAVVPILGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVREDYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661877 OG324_RS15820 WP_327428525.1 3438875..3440608(+) (rcrP) [Streptomyces sp. NBC_01236]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACTTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGCCGTGATGATCGGCATCTCGATGGCGCAGGTCGTCTGCAACATCGGAGCCGTGTACTTCGGCGCC
CGTACGGCATCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGTGTCCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGGGCTCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCACGGTG
CTGATCGCCGTGGTGCCGATCCTCGGCATCGGCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGAGG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTTCTCGACACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCGGCCCGGCGAGGTGACGGCCGTGATCGGGTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACGGACGGCGAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTCCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGACCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAACGTGTCCGGTGGTCAGCGCCAGCGCCTG
GCCATCGCCCGTACGCTCGTCCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGCGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.691

100

0.4