Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MM522_RS13750 Genome accession   NZ_CP093067
Coordinates   2653261..2653905 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2648261..2658905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS13715 (MM522_13715) mrpB 2649451..2649882 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  MM522_RS13720 (MM522_13720) mrpC 2649882..2650223 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  MM522_RS13725 (MM522_13725) mrpD 2650216..2651697 (+) 1482 WP_241495649.1 Na+/H+ antiporter subunit D -
  MM522_RS13730 (MM522_13730) mrpE 2651703..2652179 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  MM522_RS13735 (MM522_13735) mrpF 2652179..2652463 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  MM522_RS13740 (MM522_13740) mnhG 2652447..2652821 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  MM522_RS13745 (MM522_13745) yuxO 2652862..2653242 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  MM522_RS13750 (MM522_13750) comA 2653261..2653905 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  MM522_RS13755 (MM522_13755) comP 2653986..2656298 (-) 2313 WP_047183111.1 histidine kinase Regulator
  MM522_RS13760 (MM522_13760) comX 2656314..2656535 (-) 222 WP_014114983.1 competence pheromone ComX -
  MM522_RS13765 (MM522_13765) - 2656532..2657401 (-) 870 WP_161476745.1 polyprenyl synthetase family protein -
  MM522_RS13770 (MM522_13770) degQ 2657586..2657726 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  MM522_RS13775 (MM522_13775) - 2657948..2658073 (+) 126 WP_003228793.1 hypothetical protein -
  MM522_RS13780 (MM522_13780) - 2658187..2658555 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=661862 MM522_RS13750 WP_003220716.1 2653261..2653905(-) (comA) [Bacillus subtilis strain ATC-3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=661862 MM522_RS13750 WP_003220716.1 2653261..2653905(-) (comA) [Bacillus subtilis strain ATC-3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1