Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MM522_RS11775 Genome accession   NZ_CP093067
Coordinates   2263245..2263991 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258245..2268991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS11750 (MM522_11750) mreC 2258651..2259523 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  MM522_RS11755 (MM522_11755) mreB 2259554..2260567 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MM522_RS11760 (MM522_11760) radC 2260659..2261354 (-) 696 WP_003246034.1 DNA repair protein RadC -
  MM522_RS11765 (MM522_11765) maf 2261391..2261960 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MM522_RS11770 (MM522_11770) spoIIB 2262113..2263111 (-) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  MM522_RS11775 (MM522_11775) comC 2263245..2263991 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  MM522_RS11780 (MM522_11780) folC 2264134..2265426 (-) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MM522_RS11785 (MM522_11785) valS 2265487..2268129 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  MM522_RS11790 (MM522_11790) - 2268575..2268766 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=661857 MM522_RS11775 WP_101172351.1 2263245..2263991(-) (comC) [Bacillus subtilis strain ATC-3]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=661857 MM522_RS11775 WP_101172351.1 2263245..2263991(-) (comC) [Bacillus subtilis strain ATC-3]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992