Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MM522_RS10230 Genome accession   NZ_CP093067
Coordinates   2007483..2008250 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain ATC-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2002483..2013250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS10210 (MM522_10210) ppsR 2002609..2003469 (-) 861 WP_241495714.1 pyruvate, water dikinase regulatory protein -
  MM522_RS10215 (MM522_10215) ccpN 2003495..2004133 (-) 639 WP_119900122.1 transcriptional regulator CcpN -
  MM522_RS10220 (MM522_10220) glyS 2004266..2006305 (-) 2040 WP_119899566.1 glycine--tRNA ligase subunit beta -
  MM522_RS10225 (MM522_10225) glyQ 2006298..2007185 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  MM522_RS10230 (MM522_10230) recO 2007483..2008250 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  MM522_RS10235 (MM522_10235) yqzL 2008287..2008430 (-) 144 WP_003230053.1 YqzL family protein -
  MM522_RS10240 (MM522_10240) era 2008578..2009483 (-) 906 WP_003230051.1 GTPase Era -
  MM522_RS10245 (MM522_10245) cdd 2009464..2009874 (-) 411 WP_003230049.1 cytidine deaminase -
  MM522_RS10250 (MM522_10250) unpK 2009993..2010364 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  MM522_RS10255 (MM522_10255) ybeY 2010345..2010818 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  MM522_RS10260 (MM522_10260) pgpH 2010819..2012954 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=661849 MM522_RS10230 WP_003230055.1 2007483..2008250(-) (recO) [Bacillus subtilis strain ATC-3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=661849 MM522_RS10230 WP_003230055.1 2007483..2008250(-) (recO) [Bacillus subtilis strain ATC-3]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1