Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MM522_RS08715 Genome accession   NZ_CP093067
Coordinates   1740324..1740944 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATC-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1735324..1745944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS08675 (MM522_08675) ypqE 1736455..1736961 (-) 507 WP_029317998.1 PTS glucose transporter subunit IIA -
  MM522_RS08680 (MM522_08680) ypqA 1737099..1737518 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  MM522_RS08685 (MM522_08685) yppG 1737539..1737916 (-) 378 WP_004398696.1 YppG family protein -
  MM522_RS08690 (MM522_08690) yppF 1738104..1738292 (+) 189 WP_003230690.1 YppF family protein -
  MM522_RS08695 (MM522_08695) yppE 1738331..1738702 (-) 372 WP_015714151.1 YppE family protein -
  MM522_RS08700 (MM522_08700) yppD 1738748..1738993 (-) 246 WP_015251831.1 YppD family protein -
  MM522_RS08705 (MM522_08705) sspM 1739192..1739296 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MM522_RS08710 (MM522_08710) yppC 1739321..1740283 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  MM522_RS08715 (MM522_08715) recU 1740324..1740944 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MM522_RS08720 (MM522_08720) ponA 1740966..1743719 (+) 2754 WP_029317996.1 PBP1A family penicillin-binding protein -
  MM522_RS08725 (MM522_08725) ypoC 1743795..1744289 (-) 495 WP_009967579.1 YpoC family protein -
  MM522_RS08730 (MM522_08730) nth 1744286..1744945 (-) 660 WP_009967580.1 endonuclease III -
  MM522_RS08735 (MM522_08735) dnaD 1744964..1745662 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=661837 MM522_RS08715 WP_004399067.1 1740324..1740944(+) (recU) [Bacillus subtilis strain ATC-3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=661837 MM522_RS08715 WP_004399067.1 1740324..1740944(+) (recU) [Bacillus subtilis strain ATC-3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1