Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MM522_RS05475 Genome accession   NZ_CP093067
Coordinates   1035033..1035311 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain ATC-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030033..1040311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM522_RS05455 (MM522_05455) - 1031221..1032132 (+) 912 WP_029317745.1 ketopantoate reductase family protein -
  MM522_RS05460 (MM522_05460) ampS 1032166..1033398 (-) 1233 WP_003232341.1 aminopeptidase -
  MM522_RS05465 (MM522_05465) ykpC 1033507..1033641 (-) 135 WP_003238865.1 protein YkpC -
  MM522_RS05470 (MM522_05470) mreBH 1033742..1034749 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  MM522_RS05475 (MM522_05475) abrB 1035033..1035311 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  MM522_RS05480 (MM522_05480) kinC 1035501..1036787 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  MM522_RS05485 (MM522_05485) ykqA 1036803..1037630 (+) 828 WP_029317746.1 gamma-glutamylcyclotransferase -
  MM522_RS05490 (MM522_05490) ktrC 1037693..1038358 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MM522_RS05495 (MM522_05495) ade 1038514..1040250 (+) 1737 WP_029317747.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=661832 MM522_RS05475 WP_003244728.1 1035033..1035311(+) (abrB) [Bacillus subtilis strain ATC-3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=661832 MM522_RS05475 WP_003244728.1 1035033..1035311(+) (abrB) [Bacillus subtilis strain ATC-3]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576