Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SRT_RS03655 Genome accession   NZ_AP014612
Coordinates   716134..717027 (-) Length   297 a.a.
NCBI ID   WP_161940020.1    Uniprot ID   A0A1L7LIK8
Organism   Streptococcus troglodytae strain TKU 31     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 711134..722027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRT_RS03635 (SRT_07040) cas2 711449..711772 (+) 324 WP_128833073.1 CRISPR-associated endonuclease Cas2 -
  SRT_RS03640 (SRT_07060) csn2-St 711769..712817 (+) 1049 Protein_671 CRISPR-associated protein Csn2-St -
  SRT_RS03645 (SRT_07070) - 715280..715471 (+) 192 WP_128833074.1 type II toxin-antitoxin system HicA family toxin -
  SRT_RS03650 (SRT_07080) - 715489..715866 (+) 378 WP_128833075.1 type II toxin-antitoxin system HicB family antitoxin -
  SRT_RS03655 (SRT_07090) irvR 716134..717027 (-) 894 WP_161940020.1 XRE family transcriptional regulator Regulator
  SRT_RS03660 (SRT_07100) - 717363..717625 (+) 263 Protein_675 helix-turn-helix domain-containing protein -
  SRT_RS03665 (SRT_07110) gbpC 717788..719539 (+) 1752 WP_128833076.1 glucan-binding protein GbpC -
  SRT_RS11155 (SRT_07120) - 719942..720070 (+) 129 WP_128833077.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33668.48 Da        Isoelectric Point: 7.1850

>NTDB_id=66172 SRT_RS03655 WP_161940020.1 716134..717027(-) (irvR) [Streptococcus troglodytae strain TKU 31]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSFNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQLKVLDFCYQQSKEQKETVTIAADDKTSEDAITSKSHHAEYQKIVDSYIAKELKDQTI
IHWDNVIKAKDLYQTLGRQYTNIQVYGEVSAGTGIWVGQEKQETIQYPTPIPEHDIALTVNGNSMEPLFYDGDVIFVKRT
KAIHHGQIIVIIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=66172 SRT_RS03655 WP_161940020.1 716134..717027(-) (irvR) [Streptococcus troglodytae strain TKU 31]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCATTTAGCTACTATCCTTAACATTCCTACAAGTAGTTTTAATGAATATGTTAAAGGAAAGA
GTCTGCCAAAAATAGGGAACATTCAAAAAATCGCGGATTACTTTGGTCTACAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGCTAAAGGTCTT
AGATTTCTGTTATCAACAATCAAAAGAACAAAAAGAAACTGTGACCATAGCTGCTGACGATAAAACATCTGAAGATGCGA
TTACCAGCAAATCTCATCATGCAGAATATCAAAAGATTGTCGACTCTTATATCGCCAAAGAGTTAAAAGATCAAACCATT
ATTCATTGGGACAATGTGATAAAAGCTAAAGATCTGTATCAAACCTTAGGACGCCAATACACAAACATTCAAGTTTACGG
AGAAGTTTCTGCCGGCACCGGCATCTGGGTTGGACAGGAAAAACAAGAAACCATTCAATATCCAACACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAACGGCAACAGCATGGAACCCTTATTTTACGATGGCGATGTTATCTTCGTTAAAAGGACT
AAGGCTATTCATCATGGACAGATTATCGTTATTATCGTAAATAACGAGGCCTATGTCAAAAAACTTTACCGAAAAAATAA
AGAAATCCGTCTCATCTCCTTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACGATTGAAGTCATCGGCA
CAGTCATTACCTAA

Domains

Predicted by InterproScan.

Peptidase S24-like (Peptidase_S24)

(184-296)

Cro/C1-type HTH DNA-binding domain (HTH_26)

(20-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L7LIK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

89.899

100

0.899

Multiple sequence alignment