Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG306_RS28880 Genome accession   NZ_CP108494
Coordinates   6418055..6418849 (-) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01241     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6413055..6423849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG306_RS28870 (OG306_28860) - 6413875..6415923 (+) 2049 WP_266749130.1 IucA/IucC family siderophore biosynthesis protein -
  OG306_RS28875 (OG306_28865) - 6415974..6417944 (+) 1971 WP_266749132.1 ATP-dependent DNA helicase -
  OG306_RS28880 (OG306_28870) dinR/lexA 6418055..6418849 (-) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OG306_RS28885 (OG306_28875) nrdR 6419455..6419967 (+) 513 WP_266749133.1 transcriptional regulator NrdR -
  OG306_RS28890 (OG306_28880) - 6420127..6423030 (+) 2904 WP_266749135.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=661693 OG306_RS28880 WP_093898912.1 6418055..6418849(-) (dinR/lexA) [Streptomyces sp. NBC_01241]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=661693 OG306_RS28880 WP_093898912.1 6418055..6418849(-) (dinR/lexA) [Streptomyces sp. NBC_01241]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAACCCGTGCGCCCAGCGCGCTCGCTACCCGGCCGACCTCCAGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGGTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCAGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTTCGTCGCGATCCCCATCGCCCCCGGGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCTCGCAGCCCA
CCGATACGACCGGGAAGCCCGCGGCGTCGTACGTGCCGCTCGTCGGCCGGATCGCAGCGGGTGGCCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTGCCCCGCCAGCTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375