Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MMZ66_RS26555 Genome accession   NZ_CP093031
Coordinates   5634584..5635141 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain H03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5629584..5640141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ66_RS26535 (MMZ66_26545) pilR 5630860..5632197 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  MMZ66_RS26540 (MMZ66_26550) thiO 5632243..5633337 (-) 1095 WP_003094695.1 glycine oxidase ThiO -
  MMZ66_RS26545 (MMZ66_26555) - 5633472..5633981 (+) 510 WP_015503652.1 Tfp pilus assembly protein FimT/FimU -
  MMZ66_RS26550 (MMZ66_26560) - 5634087..5634593 (+) 507 WP_003094696.1 Tfp pilus assembly protein FimT/FimU -
  MMZ66_RS26555 (MMZ66_26565) pilV 5634584..5635141 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  MMZ66_RS26560 (MMZ66_26570) pilW 5635138..5635962 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  MMZ66_RS26565 (MMZ66_26575) pilX 5635959..5636546 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  MMZ66_RS26570 (MMZ66_26580) pilY1 5636558..5640049 (+) 3492 Protein_5267 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=661682 MMZ66_RS26555 WP_003094697.1 5634584..5635141(+) (pilV) [Pseudomonas aeruginosa strain H03]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=661682 MMZ66_RS26555 WP_003094697.1 5634584..5635141(+) (pilV) [Pseudomonas aeruginosa strain H03]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978