Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MMZ68_RS27450 Genome accession   NZ_CP093028
Coordinates   5824458..5825015 (+) Length   185 a.a.
NCBI ID   WP_019486632.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5819458..5830015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS27430 (MMZ68_27430) pilR 5820734..5822071 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  MMZ68_RS27435 (MMZ68_27435) thiO 5822117..5823211 (-) 1095 WP_023094393.1 glycine oxidase ThiO -
  MMZ68_RS27440 (MMZ68_27440) - 5823346..5823855 (+) 510 WP_019486634.1 Tfp pilus assembly protein FimT/FimU -
  MMZ68_RS27445 (MMZ68_27445) - 5823961..5824467 (+) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  MMZ68_RS27450 (MMZ68_27450) pilV 5824458..5825015 (+) 558 WP_019486632.1 type 4a pilus minor pilin PilV Machinery gene
  MMZ68_RS27455 (MMZ68_27455) pilW 5825012..5825836 (+) 825 WP_023094394.1 type 4a pilus minor pilin PilW -
  MMZ68_RS27460 (MMZ68_27460) pilX 5825833..5826420 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  MMZ68_RS27465 (MMZ68_27465) pilY1 5826432..5829917 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20086.26 Da        Isoelectric Point: 7.9204

>NTDB_id=661614 MMZ68_RS27450 WP_019486632.1 5824458..5825015(+) (pilV) [Pseudomonas aeruginosa strain H05]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPTSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=661614 MMZ68_RS27450 WP_019486632.1 5824458..5825015(+) (pilV) [Pseudomonas aeruginosa strain H05]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGAATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGACCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978