Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MMZ68_RS10365 Genome accession   NZ_CP093028
Coordinates   2198649..2199284 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain H05     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193649..2204284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS10350 (MMZ68_10350) - 2194358..2195602 (+) 1245 WP_019485501.1 lipoprotein-releasing ABC transporter permease subunit -
  MMZ68_RS10355 (MMZ68_10355) - 2195687..2196220 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  MMZ68_RS10360 (MMZ68_10360) comA 2196351..2198576 (+) 2226 WP_019485500.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MMZ68_RS10365 (MMZ68_10365) exbB 2198649..2199284 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MMZ68_RS10370 (MMZ68_10370) - 2199281..2199721 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  MMZ68_RS10375 (MMZ68_10375) lpxK 2199721..2200719 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  MMZ68_RS10380 (MMZ68_10380) - 2200757..2200942 (+) 186 WP_003091157.1 Trm112 family protein -
  MMZ68_RS10385 (MMZ68_10385) kdsB 2200942..2201706 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MMZ68_RS10390 (MMZ68_10390) - 2201706..2202170 (+) 465 WP_033983129.1 low molecular weight protein-tyrosine-phosphatase -
  MMZ68_RS10395 (MMZ68_10395) murB 2202167..2203186 (+) 1020 WP_019485499.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=661599 MMZ68_RS10365 WP_003091163.1 2198649..2199284(+) (exbB) [Pseudomonas aeruginosa strain H05]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=661599 MMZ68_RS10365 WP_003091163.1 2198649..2199284(+) (exbB) [Pseudomonas aeruginosa strain H05]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81