Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG348_RS09705 Genome accession   NZ_CP108491
Coordinates   2197476..2198270 (+) Length   264 a.a.
NCBI ID   WP_124720948.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01243     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192476..2203270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG348_RS09690 (OG348_09695) - 2192766..2193209 (-) 444 WP_266621715.1 helix-turn-helix transcriptional regulator -
  OG348_RS09695 (OG348_09700) - 2193388..2196282 (-) 2895 WP_124720950.1 vitamin B12-dependent ribonucleotide reductase -
  OG348_RS09700 (OG348_09705) nrdR 2196443..2196955 (-) 513 WP_124720949.1 transcriptional regulator NrdR -
  OG348_RS09705 (OG348_09710) dinR/lexA 2197476..2198270 (+) 795 WP_124720948.1 transcriptional repressor LexA Regulator
  OG348_RS09710 (OG348_09715) - 2198353..2200323 (-) 1971 WP_266688215.1 ATP-dependent DNA helicase -
  OG348_RS09715 (OG348_09720) - 2200361..2202250 (-) 1890 WP_124720946.1 IucA/IucC family siderophore biosynthesis protein -
  OG348_RS09720 (OG348_09725) - 2202311..2203126 (-) 816 WP_124720945.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28672.46 Da        Isoelectric Point: 6.9854

>NTDB_id=661561 OG348_RS09705 WP_124720948.1 2197476..2198270(+) (dinR/lexA) [Streptomyces sp. NBC_01243]
MTTTADSAIITAQDRSQSRFEPVHAMNDSVTNMEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=661561 OG348_RS09705 WP_124720948.1 2197476..2198270(+) (dinR/lexA) [Streptomyces sp. NBC_01243]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGATTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACATGGAGGGGCCAGAGCCCGCGCGCCCGGCGCGCTCATTGCCCGGTCGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGATTCCGTGCAACGGCGTGGATATCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGGTTCCTGCGCCGCGACCCGCACCGTCCGCGGGCGTACGAGGTCCGAGGTTCGGACCAGCCCAGCTCGCAGCCCA
CCGACACGACCGGCAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAACTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACAGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTCTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375