Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MMZ71_RS26980 Genome accession   NZ_CP093022
Coordinates   5711677..5713038 (-) Length   453 a.a.
NCBI ID   WP_124074705.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5706677..5718038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ71_RS26955 (MMZ71_26960) yjiA 5706864..5707868 (-) 1005 WP_003094852.1 GTPase -
  MMZ71_RS26960 (MMZ71_26965) - 5707928..5708131 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  MMZ71_RS26965 (MMZ71_26970) - 5708180..5710246 (-) 2067 WP_003141584.1 carbon starvation CstA family protein -
  MMZ71_RS26970 (MMZ71_26975) - 5710584..5711090 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  MMZ71_RS26975 (MMZ71_26980) mapZ 5711293..5711670 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  MMZ71_RS26980 (MMZ71_26985) radA 5711677..5713038 (-) 1362 WP_124074705.1 DNA repair protein RadA Machinery gene
  MMZ71_RS26985 (MMZ71_26990) - 5713148..5713582 (+) 435 WP_003110876.1 CopD family protein -
  MMZ71_RS26990 (MMZ71_26995) - 5713644..5713898 (-) 255 WP_033953156.1 YdcH family protein -
  MMZ71_RS26995 (MMZ71_27000) - 5713973..5714524 (-) 552 WP_023875993.1 ankyrin repeat domain-containing protein -
  MMZ71_RS27000 (MMZ71_27005) katB 5714578..5716119 (-) 1542 WP_023104760.1 catalase KatB -
  MMZ71_RS27005 (MMZ71_27010) - 5716226..5716603 (-) 378 WP_171410798.1 hypothetical protein -
  MMZ71_RS27010 (MMZ71_27015) mscL 5716646..5717059 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  MMZ71_RS27015 (MMZ71_27020) - 5717164..5717940 (-) 777 WP_003110878.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48440.83 Da        Isoelectric Point: 6.6119

>NTDB_id=661546 MMZ71_RS26980 WP_124074705.1 5711677..5713038(-) (radA) [Pseudomonas aeruginosa strain H08]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RWVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=661546 MMZ71_RS26980 WP_124074705.1 5711677..5713038(-) (radA) [Pseudomonas aeruginosa strain H08]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAGATGCCGCGCTTCACGACCGGTTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAAGGCGAG
TCAGACGGCCGCCTGCGTCTGCTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGTGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGGATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGTCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)

AAA domain (AAA_25)

(74-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.483
  radA Streptococcus mitis SK321

46.171

100

0.466
  radA Streptococcus pneumoniae Rx1

46.07

100

0.466
  radA Streptococcus pneumoniae D39

46.07

100

0.466
  radA Streptococcus pneumoniae R6

46.07

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.07

100

0.466
  radA Streptococcus mitis NCTC 12261

45.952

100

0.464