Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MMZ72_RS24430 Genome accession   NZ_CP093021
Coordinates   5278823..5280184 (-) Length   453 a.a.
NCBI ID   WP_003094867.1    Uniprot ID   A0A0H2ZHH7
Organism   Pseudomonas aeruginosa strain H09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5273823..5285184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS24405 (MMZ72_24405) yjiA 5273991..5274995 (-) 1005 WP_024914605.1 GTPase -
  MMZ72_RS24410 (MMZ72_24410) - 5275055..5275258 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  MMZ72_RS24415 (MMZ72_24415) - 5275307..5277373 (-) 2067 WP_024914604.1 carbon starvation CstA family protein -
  MMZ72_RS24420 (MMZ72_24420) - 5277730..5278236 (-) 507 WP_024914603.1 DUF3015 domain-containing protein -
  MMZ72_RS24425 (MMZ72_24425) mapZ 5278439..5278816 (+) 378 WP_024914602.1 cyclic di-GMP-binding protein MapZ -
  MMZ72_RS24430 (MMZ72_24430) radA 5278823..5280184 (-) 1362 WP_003094867.1 DNA repair protein RadA Machinery gene
  MMZ72_RS24435 (MMZ72_24435) - 5280294..5280728 (+) 435 WP_024914601.1 CopD family protein -
  MMZ72_RS24440 (MMZ72_24440) - 5280791..5281045 (-) 255 WP_003104887.1 YdcH family protein -
  MMZ72_RS24445 (MMZ72_24445) - 5281120..5281671 (-) 552 WP_024914599.1 ankyrin repeat domain-containing protein -
  MMZ72_RS24450 (MMZ72_24450) katB 5281725..5283266 (-) 1542 WP_024914598.1 catalase KatB -
  MMZ72_RS24455 (MMZ72_24455) - 5283263..5283526 (-) 264 WP_153957608.1 hypothetical protein -
  MMZ72_RS24460 (MMZ72_24460) mscL 5283792..5284205 (+) 414 WP_003104883.1 large-conductance mechanosensitive channel protein MscL -
  MMZ72_RS24465 (MMZ72_24465) - 5284292..5285068 (-) 777 WP_024914597.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48410.81 Da        Isoelectric Point: 6.8357

>NTDB_id=661511 MMZ72_RS24430 WP_003094867.1 5278823..5280184(-) (radA) [Pseudomonas aeruginosa strain H09]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=661511 MMZ72_RS24430 WP_003094867.1 5278823..5280184(-) (radA) [Pseudomonas aeruginosa strain H09]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAAGTCAGCGTCGAGGAGATGCCGCGCTTCACGACCGGTTCCACCGAGCTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACCATTCTTCT
ACAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTATGTCACCGGTGAGGAGTCGCAGCAGCAGGTGGCGATGC
GCGCTCGGCGCCTGTCGCTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAGACCATCATCGCCACCGCG
CGCCAGGAGCAGCCACGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTACTTCGAGGGCGAG
TCGGACGGCCGCCTGCGTCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGGGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGCATCCCGAC
CTACGACCAGGACGTATTCCTCAATGTGGTGGGTGGGGTCAAGGTACTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAATCGTCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAAGTCGGGTTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCTCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZHH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466