Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MMZ72_RS24135 Genome accession   NZ_CP093021
Coordinates   5210577..5211134 (+) Length   185 a.a.
NCBI ID   WP_024914648.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5205577..5216134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS24115 (MMZ72_24115) pilR 5206854..5208191 (+) 1338 WP_024914651.1 two-component system response regulator PilR Regulator
  MMZ72_RS24120 (MMZ72_24120) thiO 5208236..5209330 (-) 1095 WP_024914650.1 glycine oxidase ThiO -
  MMZ72_RS24125 (MMZ72_24125) - 5209465..5209974 (+) 510 WP_024914649.1 Tfp pilus assembly protein FimT/FimU -
  MMZ72_RS24130 (MMZ72_24130) - 5210080..5210586 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  MMZ72_RS24135 (MMZ72_24135) pilV 5210577..5211134 (+) 558 WP_024914648.1 type 4a pilus minor pilin PilV Machinery gene
  MMZ72_RS24140 (MMZ72_24140) pilW 5211131..5211955 (+) 825 WP_031673722.1 type 4a pilus minor pilin PilW -
  MMZ72_RS24145 (MMZ72_24145) pilX 5211952..5212539 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MMZ72_RS24150 (MMZ72_24150) pilY1 5212551..5216036 (+) 3486 WP_241469223.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20019.07 Da        Isoelectric Point: 8.2255

>NTDB_id=661510 MMZ72_RS24135 WP_024914648.1 5210577..5211134(+) (pilV) [Pseudomonas aeruginosa strain H09]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAVKDRLGCWAEQAKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=661510 MMZ72_RS24135 WP_024914648.1 5210577..5211134(+) (pilV) [Pseudomonas aeruginosa strain H09]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGATTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGGT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGCGAAGAACGAACTGCCAGGCGCTGGAGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCGATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984