Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   MMZ72_RS23660 Genome accession   NZ_CP093021
Coordinates   5104675..5106168 (+) Length   497 a.a.
NCBI ID   WP_024914711.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5099675..5111168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS23630 (MMZ72_23630) - 5099887..5100696 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  MMZ72_RS23635 (MMZ72_23635) kdsD 5101110..5102090 (+) 981 WP_003094347.1 arabinose-5-phosphate isomerase KdsD -
  MMZ72_RS23640 (MMZ72_23640) - 5102090..5102629 (+) 540 WP_058141249.1 HAD family hydrolase -
  MMZ72_RS23645 (MMZ72_23645) lptC 5102638..5103210 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  MMZ72_RS23650 (MMZ72_23650) lptA 5103197..5103724 (+) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  MMZ72_RS23655 (MMZ72_23655) lptB 5103724..5104449 (+) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  MMZ72_RS23660 (MMZ72_23660) rpoN/rpoN1 5104675..5106168 (+) 1494 WP_024914711.1 RNA polymerase factor sigma-54 Machinery gene
  MMZ72_RS23665 (MMZ72_23665) hpf 5106246..5106554 (+) 309 WP_003094359.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  MMZ72_RS23670 (MMZ72_23670) ptsN 5106568..5107032 (+) 465 WP_024914710.1 PTS IIA-like nitrogen regulatory protein PtsN -
  MMZ72_RS23675 (MMZ72_23675) rapZ 5107034..5107894 (+) 861 WP_024914709.1 RNase adapter RapZ -
  MMZ72_RS23680 (MMZ72_23680) - 5107924..5108196 (+) 273 WP_003094362.1 HPr family phosphocarrier protein -
  MMZ72_RS23685 (MMZ72_23685) - 5108304..5108717 (+) 414 WP_241469210.1 SH3 domain-containing protein -
  MMZ72_RS23690 (MMZ72_23690) - 5108775..5109707 (-) 933 WP_241469211.1 ZIP family metal transporter -
  MMZ72_RS23695 (MMZ72_23695) - 5109726..5110337 (-) 612 WP_024914706.1 superoxide dismutase -
  MMZ72_RS23700 (MMZ72_23700) - 5110350..5110799 (-) 450 WP_017002538.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56041.22 Da        Isoelectric Point: 4.4351

>NTDB_id=661502 MMZ72_RS23660 WP_024914711.1 5104675..5106168(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain H09]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSSDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELEVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=661502 MMZ72_RS23660 WP_024914711.1 5104675..5106168(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain H09]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCGCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCGCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATTCCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAGCGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGCATGATCGCA
GTGACCATCATCGATAGCATCAACAACGACGGCTACCTCGAAGAGTCCCTCGAAGAGATCCTCGCCGCCATCGATCCGGA
ACTGGAGGTCGAACTCGACGAAGTGGAAGTCGTGCTGCGTCGCATCCAGCAGCTGGAGCCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCATCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTTGGCGGCCGCGACTACAGCCAGTTGATGCGACGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAACTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAAT
GCGACCTACGCCGGCATGGTCCGTCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAAAGCCGCAACGAAACGCTGATGAAGGTCGCGACCCAAATCGTCGAGCACCAGCGTGGTT
TCCTCGACTACGGTGAAGAAGCCATGAAGCCGCTGGTCCTGCATGACATCGCCGAGGCGGTGGGCATGCACGAGTCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCACACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGCACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

47.047

100

0.481