Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG247_RS18250 Genome accession   NZ_CP108488
Coordinates   4111237..4112214 (-) Length   325 a.a.
NCBI ID   WP_327253246.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01244     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4106237..4117214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG247_RS18230 (OG247_18260) pfkB 4106555..4107508 (-) 954 WP_327253242.1 1-phosphofructokinase -
  OG247_RS18235 (OG247_18265) - 4107505..4108266 (-) 762 WP_327253243.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG247_RS18240 (OG247_18270) - 4108448..4110037 (-) 1590 WP_327253244.1 MFS transporter -
  OG247_RS18245 (OG247_18275) - 4110100..4111059 (+) 960 WP_327253245.1 transcriptional regulator -
  OG247_RS18250 (OG247_18280) rpoS 4111237..4112214 (-) 978 WP_327253246.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG247_RS18255 (OG247_18285) - 4112740..4113384 (+) 645 WP_327253247.1 Uma2 family endonuclease -
  OG247_RS18260 (OG247_18290) - 4113381..4113752 (-) 372 WP_327253248.1 hypothetical protein -
  OG247_RS18265 (OG247_18295) - 4113745..4114539 (-) 795 WP_327253249.1 class III extradiol ring-cleavage dioxygenase -
  OG247_RS18270 (OG247_18300) - 4114675..4116210 (-) 1536 WP_327253250.1 MFS transporter -
  OG247_RS18275 (OG247_18305) - 4116297..4116980 (-) 684 WP_327257526.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36594.49 Da        Isoelectric Point: 5.4071

>NTDB_id=661496 OG247_RS18250 WP_327253246.1 4111237..4112214(-) (rpoS) [Streptomyces sp. NBC_01244]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGKKPSREELE
FLAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMGVDEDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=661496 OG247_RS18250 WP_327253246.1 4111237..4112214(-) (rpoS) [Streptomyces sp. NBC_01244]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCGGCCAAGGAAGTCGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCGCAGCAGATCCTCGACGGTGCGATAGAGCGCAAGGGCAAGAAGCCCTCCCGGGAGGAGCTCGAG
TTCCTGGCCGCCGAGGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTGGTCGTCGCCGTGGCCCGCCG
CTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGGCTGGTCCGCGCCGTGGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCGATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACGACGGAGAAGCGCGTCGGCGACGTCCTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGGGCGTGGACGAGGACGGCGACACGCAGTTCGGCGACCTGCTGGAAGACACC
TCGGCGATTTCCCCCGAGCAGTCCGTCCTCTCCCTCCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGAACCGCGTCGATCATCAAGATGCGTTACGGCATTGAAGACGGTCGAGAGCGTACGCTGACGGAAGTGGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCCGCGACACCGGC
TTCGACGCGGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-314)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366