Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MMZ72_RS09980 Genome accession   NZ_CP093021
Coordinates   2155322..2155957 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain H09     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2150322..2160957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS09965 (MMZ72_09965) - 2151010..2152254 (+) 1245 WP_058139294.1 lipoprotein-releasing ABC transporter permease subunit -
  MMZ72_RS09970 (MMZ72_09970) - 2152360..2152893 (-) 534 WP_024917554.1 DUF2062 domain-containing protein -
  MMZ72_RS09975 (MMZ72_09975) comA 2153024..2155249 (+) 2226 WP_241469651.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MMZ72_RS09980 (MMZ72_09980) exbB 2155322..2155957 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MMZ72_RS09985 (MMZ72_09985) - 2155954..2156394 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  MMZ72_RS09990 (MMZ72_09990) lpxK 2156394..2157392 (+) 999 WP_058017665.1 tetraacyldisaccharide 4'-kinase -
  MMZ72_RS09995 (MMZ72_09995) - 2157430..2157615 (+) 186 WP_003091157.1 Trm112 family protein -
  MMZ72_RS10000 (MMZ72_10000) kdsB 2157615..2158379 (+) 765 WP_241469653.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MMZ72_RS10005 (MMZ72_10005) - 2158379..2158843 (+) 465 WP_121127976.1 low molecular weight protein-tyrosine-phosphatase -
  MMZ72_RS10010 (MMZ72_10010) murB 2158840..2159859 (+) 1020 WP_241469655.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=661494 MMZ72_RS09980 WP_003091163.1 2155322..2155957(+) (exbB) [Pseudomonas aeruginosa strain H09]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=661494 MMZ72_RS09980 WP_003091163.1 2155322..2155957(+) (exbB) [Pseudomonas aeruginosa strain H09]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCTGCGGGCATCTCCAAGGCCTTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCGATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81