Detailed information    

insolico Bioinformatically predicted

Overview


Name   fimV   Type   Machinery gene
Locus tag   MMZ72_RS09320 Genome accession   NZ_CP093021
Coordinates   2000735..2003494 (+) Length   919 a.a.
NCBI ID   WP_241469621.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1995735..2008494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS09300 (MMZ72_09300) - 1996370..1997131 (+) 762 WP_121305557.1 class I SAM-dependent methyltransferase -
  MMZ72_RS09305 (MMZ72_09305) leuB 1997190..1998272 (+) 1083 WP_024914995.1 3-isopropylmalate dehydrogenase -
  MMZ72_RS09310 (MMZ72_09310) asd 1998342..1999454 (+) 1113 WP_241469617.1 aspartate-semialdehyde dehydrogenase -
  MMZ72_RS09315 (MMZ72_09315) - 1999556..2000566 (+) 1011 WP_241469619.1 aspartate-semialdehyde dehydrogenase -
  MMZ72_RS09320 (MMZ72_09320) fimV 2000735..2003494 (+) 2760 WP_241469621.1 motility hub landmark protein FimV Machinery gene
  MMZ72_RS09325 (MMZ72_09325) truA 2003516..2004373 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  MMZ72_RS09330 (MMZ72_09330) - 2004463..2005098 (+) 636 WP_024914999.1 phosphoribosylanthranilate isomerase -
  MMZ72_RS09335 (MMZ72_09335) accD 2005366..2006238 (+) 873 WP_023123101.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  MMZ72_RS09340 (MMZ72_09340) folC 2006235..2007524 (+) 1290 WP_241469622.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  MMZ72_RS09345 (MMZ72_09345) - 2007528..2008187 (+) 660 WP_121351126.1 SPOR domain-containing protein -

Sequence


Protein


Download         Length: 919 a.a.        Molecular weight: 96947.10 Da        Isoelectric Point: 3.9347

>NTDB_id=661492 MMZ72_RS09320 WP_241469621.1 2000735..2003494(+) (fimV) [Pseudomonas aeruginosa strain H09]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASVPQAPVSAPRATSAPRAPQ
APAPLRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPAKVDATDSLRLVSGEGKASKGADKGGKGDNKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAVQPDAAQSNAAAQAPAQAGT
PAAAAPTPAPAGEAPATPAQPPVAQPPAPAAEKPPAPAVPVQAPEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMIL
SRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAA
ELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELD
SFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLDGDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDL
DFGLDFAELAETPSQPKNDDLGDFSLDLDAPEDKLSDDNFLLSLNDEVPAAAPADNEFTLDTEAADEPALSLPDDFDLSL
ADEPAEPAAPAKSEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=661492 MMZ72_RS09320 WP_241469621.1 2000735..2003494(+) (fimV) [Pseudomonas aeruginosa strain H09]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTTCTGACTTCCGGCATGGCACACGGATTGGGGCT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAGCCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGAGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGTGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACTTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGTCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ATTCCCCGCAGGCCGCGGCAAGCGTTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCAGCGCCCCGCGAGCCCCTCAG
GCTCCGGCTCCGCTGCGTACCACCGCGCCGGCAGGCAGTGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCCGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTGCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCCGGTGC
CAGACAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCAGCCAAGGTCGACGCCACGGACAGCCTGCGCCTGG
TGTCCGGCGAGGGCAAGGCCAGCAAGGGCGCCGACAAGGGCGGAAAAGGCGATAACAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGTCTCGATAGCACTCGCCGCGAGAACGAAGAGCTGCAGAGCCGCATGCAGGATTTGCAGAGCCAGTT
GGACAAGCTACAGAAGTTGATTCAGCTGAAAGACGCTCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCGGCCCAGCCGAACGCAGTTCAGCCGGATGCGGCCCAGTCCAATGCAGCCGCGCAGGCACCGGCGCAAGCCGGGACT
CCCGCTGCGGCGGCGCCGACTCCTGCTCCGGCCGGAGAAGCCCCCGCCACTCCGGCGCAGCCCCCGGTCGCTCAGCCGCC
CGCACCGGCCGCCGAGAAGCCCCCGGCACCTGCCGTTCCGGTGCAGGCGCCAGAACAGCCGGCGCCGAGTTTCCTCGACG
AGTTGCTGGCCAACCCGCTGTGGCTGGCGGTGATCGGCGGCAGCGCACTGCTGGCATTGCTGGTGCTGTTGATGATCCTG
TCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCTGCGGATGCCGGCGAGGAACAGGAGGATGCGCT
GGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCCGCTCCGCAGGTCG
AGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCC
GAACTGTTGCAGAACGCAATCTATGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGAT
GGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAACTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCA
AGTCGCGCTACCCGGCAATGGTGGCGGTCGCCGCGGTTGCCGGCCTGGCTGGCGCCAAGCTGGCGCAGGACGAGCTGGAC
AGCTTCAGCCTCGACGACCTGTCGCTCGACGATAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGTCAGGATCTCGACGA
TGCCTTCGACCTGAGCCTGGACGACCTGGACGGCGATCTCGGCGGCGACGACGTACAGGCCGACCTCAAGTCCGACAGCG
GGGCATTGGACGATCTGACCCTGGACAGCGATCTGGACCTGGCAGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCAGAGTTGGCGGAGACTCCGAGCCAGCCCAAGAATGACGACCTGGGTGACTTCTCGCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGATGACAATTTCCTGCTTTCGCTGAACGACGAGGTGCCGGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGACGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGGCGGAGCCGGCCGCCCCGGCGAAGAGCGAGGACAGTTTCGCCGCCCAGCTGGATGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAATCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCGGCGGTTGCCT
CTGCCCTGGACGGAGACGCTGACGATGACTTCGACTTCCTCTCCGGTGCTGACGAGGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGATGAAGTACTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCTCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

96.316

100

0.967