Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MMZ76_RS25690 Genome accession   NZ_CP093015
Coordinates   5498690..5499214 (+) Length   174 a.a.
NCBI ID   WP_023100237.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5493690..5504214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ76_RS25670 (MMZ76_25675) pilR 5494952..5496289 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  MMZ76_RS25675 (MMZ76_25680) thiO 5496335..5497429 (-) 1095 WP_094954041.1 glycine oxidase ThiO -
  MMZ76_RS25680 (MMZ76_25685) - 5497569..5498069 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  MMZ76_RS25685 (MMZ76_25690) - 5498192..5498680 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  MMZ76_RS25690 (MMZ76_25695) pilV 5498690..5499214 (+) 525 WP_023100237.1 type IV pilus modification protein PilV Machinery gene
  MMZ76_RS25695 (MMZ76_25700) - 5499223..5500038 (+) 816 WP_016254061.1 PilW family protein -
  MMZ76_RS25700 (MMZ76_25705) - 5500035..5500640 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -
  MMZ76_RS25705 (MMZ76_25710) - 5500654..5504130 (+) 3477 WP_094954042.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18747.51 Da        Isoelectric Point: 4.9113

>NTDB_id=661407 MMZ76_RS25690 WP_023100237.1 5498690..5499214(+) (pilV) [Pseudomonas aeruginosa strain H16]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQAAKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=661407 MMZ76_RS25690 WP_023100237.1 5498690..5499214(+) (pilV) [Pseudomonas aeruginosa strain H16]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCGCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598