Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG357_RS09930 Genome accession   NZ_CP108474
Coordinates   2293826..2294614 (+) Length   262 a.a.
NCBI ID   WP_024754934.1    Uniprot ID   A0A4Y3RGR3
Organism   Streptomyces sp. NBC_01255     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2288826..2299614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG357_RS09915 (OG357_09915) - 2289177..2289707 (+) 531 WP_329620813.1 TerD family protein -
  OG357_RS09920 (OG357_09920) - 2289792..2292692 (-) 2901 WP_329620814.1 vitamin B12-dependent ribonucleotide reductase -
  OG357_RS09925 (OG357_09925) nrdR 2292867..2293376 (-) 510 WP_329620815.1 transcriptional regulator NrdR -
  OG357_RS09930 (OG357_09930) dinR/lexA 2293826..2294614 (+) 789 WP_024754934.1 transcriptional repressor LexA Regulator
  OG357_RS09935 (OG357_09935) - 2294699..2296687 (-) 1989 WP_329620816.1 ATP-dependent DNA helicase -
  OG357_RS09940 (OG357_09940) - 2296738..2298495 (-) 1758 WP_329625548.1 IucA/IucC family siderophore biosynthesis protein -
  OG357_RS09945 (OG357_09945) - 2298629..2299354 (-) 726 WP_329620817.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28322.09 Da        Isoelectric Point: 6.9854

>NTDB_id=661400 OG357_RS09930 WP_024754934.1 2293826..2294614(+) (dinR/lexA) [Streptomyces sp. NBC_01255]
MTTTADSATITAQDRSQGRLEPVHAMNDAAMNGEEPGRPARALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEES
VEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAA
YQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 789 bp        

>NTDB_id=661400 OG357_RS09930 WP_024754934.1 2293826..2294614(+) (dinR/lexA) [Streptomyces sp. NBC_01255]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCATGAACGGCGAGGAGCCCGGGCGCCCCGCCCGAGCCCTTCCCGGGCGACCTCCAGGCATCAGGGCCGACA
GTTCCGGCCTCACCGACCGGCAGCGCCGGGTGATCGAGGTCATCCGCGACTCGGTCCAGCGGCGCGGCTACCCGCCGTCG
ATGCGCGAGATCGGCCAGGCCGTGGGGCTGTCCAGCACGTCGTCGGTGGCTCACCAGCTCATGGCCCTGGAGCGCAAGGG
CTTCCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCACGCAGCCGACGGACA
CCACGGGCAAGCCCGCCGCGTCGTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTGGCCGAGGAGTCC
GTCGAGGACGTCTTCCCGCTGCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCGAT
GATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCG
CCATGCTCGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTCCTCCCGCACAACGCGGCG
TACCAGCCCATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTGGCGGTGCTCCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(144-256)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3RGR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374