Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MLD58_RS08145 Genome accession   NZ_CP092911
Coordinates   1697242..1697847 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain SR33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692242..1702847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD58_RS08125 - 1692637..1694397 (-) 1761 WP_000156448.1 Lon protease family protein -
  MLD58_RS08130 matP 1694583..1695035 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  MLD58_RS08135 ompA 1695107..1696159 (-) 1053 WP_001670727.1 porin OmpA -
  MLD58_RS08140 sulA 1696516..1697025 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  MLD58_RS08145 sxy/tfoX 1697242..1697847 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  MLD58_RS08150 yccS 1697834..1699987 (-) 2154 WP_023138531.1 YccS family putative transporter -
  MLD58_RS08155 - 1700006..1700452 (-) 447 WP_001261222.1 YccF domain-containing protein -
  MLD58_RS08160 helD 1700576..1702630 (+) 2055 WP_023138530.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=661086 MLD58_RS08145 WP_001202375.1 1697242..1697847(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain SR33]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=661086 MLD58_RS08145 WP_001202375.1 1697242..1697847(+) (sxy/tfoX) [Salmonella enterica subsp. enterica strain SR33]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751