Detailed information NTG0661014

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG757_RS27570
• Genome accession: NZ_CP108462
• Coordinates: 5951009..5951995 (+)
• Length: 328 a.a.
• NCBI ID: WP_329317097.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01262
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5946009..5956995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG757_RS27545 (OG757_27515)	-	5946750..5947508 (-)	759	WP_329317086.1	hypothetical protein	-
OG757_RS27550 (OG757_27520)	-	5947535..5948323 (-)	789	WP_329317088.1	class III extradiol ring-cleavage dioxygenase	-
OG757_RS27555 (OG757_27525)	-	5948435..5948947 (+)	513	WP_329317090.1	MarR family transcriptional regulator	-
OG757_RS27560 (OG757_27530)	-	5948944..5949636 (-)	693	WP_329317092.1	peptidoglycan-binding domain-containing protein	-
OG757_RS27565 (OG757_27535)	-	5950318..5950833 (-)	516	WP_329317094.1	N-acetyltransferase family protein	-
OG757_RS27570 (OG757_27540)	rpoS	5951009..5951995 (+)	987	WP_329317097.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG757_RS27575 (OG757_27545)	-	5952174..5952953 (+)	780	WP_329317099.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG757_RS27580 (OG757_27550)	pfkB	5952950..5953900 (+)	951	WP_329317101.1	1-phosphofructokinase	-
OG757_RS27585 (OG757_27555)	-	5953938..5955995 (+)	2058	WP_329317103.1	fructose-specific PTS transporter subunit EIIC	-
OG757_RS27590 (OG757_27560)	-	5956092..5956253 (+)	162	WP_329317105.1	hypothetical protein	-
OG757_RS27595 (OG757_27565)	mscL	5956318..5956800 (-)	483	WP_329317107.1	large conductance mechanosensitive channel protein MscL	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 36418.97 Da
• Isoelectric Point: 5.1226

>NTDB_id=661014 OG757_RS27570 WP_329317097.1 5951009..5951995(+) (rpoS) [Streptomyces sp. NBC_01262]
MATRAVARRTAGGSSSARAGHGEIADRDLVGMYLDEIARTPLLDAAQEVELSRAIEAGVYAEQLLAGVEHGPGVDASREE
LEAIAAEGRQAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIA
DQSRTIRLPVHLVEELGRVRRVQREFNREHGRDPEPAEIAAELDSTPERVSDVLDWARDPVSLNMAVDDEGETQFGDLVE
DTSAASPEDSVLVMLRREELEDLIGRLDDRTASIIRSRYGIIDGRERTLTEVGKQHGLTRERIRQIEKHALADLKRMARA
SGLAYEAA

Nucleotide

• Length: 987 bp

>NTDB_id=661014 OG757_RS27570 WP_329317097.1 5951009..5951995(+) (rpoS) [Streptomyces sp. NBC_01262]
ATGGCAACCCGTGCCGTCGCCCGTCGTACCGCAGGCGGGAGCAGCAGCGCTCGCGCAGGGCATGGCGAGATCGCGGATCG
CGACCTCGTCGGAATGTACCTGGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCGCAGGAGGTCGAGCTTTCCAGGG
CGATAGAGGCCGGCGTCTACGCCGAGCAGCTCCTCGCGGGGGTGGAGCACGGCCCGGGCGTGGACGCCAGCCGCGAGGAG
CTCGAGGCGATAGCCGCCGAGGGACGACAGGCCAAGGACGTGTTCATACGCTCCAACCTGCGCCTCGTCGTCGCTGTGGC
CCGGCGCTACCCGCGCAGTGGCCTCCCGCTTCTCGACCTCATCCAGGAGGGCAACGCAGGCCTGGTGCGCGCGGTGGAGA
AGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCCGTCAGGCCATCACCCGGTCGATCGCC
GACCAGTCCCGGACCATCCGGCTGCCCGTCCACCTCGTCGAGGAGCTCGGCCGTGTCCGGCGGGTCCAGCGCGAGTTCAA
CCGCGAGCACGGGCGCGACCCGGAGCCCGCCGAGATCGCCGCGGAGCTGGACTCCACCCCGGAGCGCGTCTCCGACGTGC
TGGACTGGGCGCGCGACCCGGTGAGCCTCAACATGGCTGTGGACGACGAGGGTGAGACCCAGTTCGGCGACCTGGTCGAG
GACACGTCCGCCGCCTCCCCGGAGGACTCCGTTCTCGTCATGCTCCGCCGTGAGGAGCTGGAGGACCTCATAGGCCGCCT
CGACGACCGCACCGCCTCCATCATCCGTTCCCGCTACGGCATCATCGACGGCCGCGAGCGCACCCTCACCGAGGTCGGCA
AGCAGCACGGCCTCACCCGCGAGCGCATCCGTCAGATCGAGAAGCACGCTCTTGCCGACCTCAAGCGCATGGCCCGGGCA
TCGGGTCTCGCGTACGAGGCGGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-250)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

• Sigma-70, region 4 (Sigma70_r4) (264-315)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40	91.463	0.366