Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG757_RS12340 Genome accession   NZ_CP108462
Coordinates   2665586..2666776 (-) Length   396 a.a.
NCBI ID   WP_329311855.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01262     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2660586..2671776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG757_RS12320 (OG757_12315) - 2660978..2661316 (-) 339 WP_329311851.1 P-II family nitrogen regulator -
  OG757_RS12325 (OG757_12320) - 2661313..2662644 (-) 1332 WP_329311852.1 ammonium transporter -
  OG757_RS12330 (OG757_12325) - 2663077..2664567 (-) 1491 WP_329311853.1 hypothetical protein -
  OG757_RS12335 (OG757_12330) - 2664860..2665570 (+) 711 WP_329311854.1 bifunctional DNA primase/polymerase -
  OG757_RS12340 (OG757_12335) pilA 2665586..2666776 (-) 1191 WP_329311855.1 signal recognition particle-docking protein FtsY Machinery gene
  OG757_RS12345 (OG757_12340) - 2666847..2667833 (+) 987 WP_329311856.1 LLM class flavin-dependent oxidoreductase -
  OG757_RS12350 (OG757_12345) - 2667885..2671580 (-) 3696 WP_329311857.1 AAA family ATPase -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 41938.96 Da        Isoelectric Point: 4.5827

>NTDB_id=660976 OG757_RS12340 WP_329311855.1 2665586..2666776(-) (pilA) [Streptomyces sp. NBC_01262]
MDTVILAVVIALVAVVAAGGLVVGSRRKKRGLPPAPPAAPTITTPPAEPHIGEDAEVPRDEPRRTIEEVELPEAPESPEA
LKAPEIEEPEPTAGRLIRLRSRLSRSQNTLGKGLLALLSREHLDEDTWEEIEETLLTADVGVTPTQELVERLRGRVKVLG
TRTPDELRALLREELITLVGTDFDRTLKTESREDQPAVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAT
EQLQTWGDRVGARTVRGPEGGDPASVAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPVDEILLVL
DATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGADDLAPFEPAAFVDALIGE

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=660976 OG757_RS12340 WP_329311855.1 2665586..2666776(-) (pilA) [Streptomyces sp. NBC_01262]
ATGGATACCGTCATTCTCGCCGTAGTCATCGCCCTCGTCGCGGTCGTCGCCGCCGGTGGCCTGGTCGTGGGCAGCCGCCG
CAAGAAGCGCGGCCTTCCGCCCGCGCCGCCCGCCGCGCCGACGATCACCACTCCGCCTGCCGAACCGCACATCGGCGAGG
ACGCCGAGGTCCCCCGGGACGAGCCACGCCGGACCATCGAAGAGGTCGAGCTCCCGGAGGCCCCGGAATCGCCGGAAGCC
CTCAAGGCTCCGGAGATCGAGGAGCCCGAGCCCACTGCCGGCCGGCTGATCCGGCTGCGCTCCCGGCTGTCCCGCTCCCA
GAACACCCTGGGCAAGGGGCTGCTCGCGCTGCTGTCCCGCGAGCACCTCGACGAGGACACGTGGGAGGAGATCGAGGAGA
CCCTCCTCACCGCCGACGTCGGCGTCACCCCCACCCAGGAGCTGGTCGAGCGGCTGCGCGGCCGCGTGAAGGTGCTCGGC
ACCCGTACGCCCGACGAACTGCGCGCGCTGCTGCGCGAGGAGCTGATCACCCTCGTCGGCACGGACTTCGACCGCACGCT
GAAGACCGAGAGCCGTGAGGACCAGCCGGCCGTGATCATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCACCACCG
GCAAGCTCGCCCGCGTCCTGGTCGCCGACGGCCGCAGCGTCGTCCTCGGCGCCGCCGACACCTTCCGCGCCGCCGCCACC
GAGCAGCTCCAGACCTGGGGCGACCGCGTCGGCGCCCGCACCGTACGCGGCCCCGAGGGCGGCGACCCGGCCTCGGTGGC
CTTCGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTCGTCCTCATCGACACCGCGGGCCGCCTGCACACCAAGA
CCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGCCCCGTCGACGAGATCCTGCTCGTCCTC
GACGCCACCACCGGCCAGAACGGCCTGGTCCAGGCCCGCGTCTTCGCCGAGGTCGTCGACATCACCGGCATCGTCCTCAC
CAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGGGCGTCCCCGTCAAGCTCATCGGCC
TCGGCGAGGGCGCGGACGACCTGGCGCCCTTCGAGCCGGCGGCGTTCGTGGACGCACTGATCGGCGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(110-175)

SRP54-type protein, GTPase domain (SRP54)

(196-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.906

77.525

0.364