Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ML603_RS08985 Genome accession   NZ_CP092887
Coordinates   1814121..1815482 (-) Length   453 a.a.
NCBI ID   WP_138126586.1    Uniprot ID   A0A9X7SIV6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809121..1820482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS08960 (ML603_08960) - 1809843..1811111 (-) 1269 WP_241067170.1 MFS transporter -
  ML603_RS08965 (ML603_08965) - 1811206..1811907 (-) 702 WP_143927970.1 hypothetical protein -
  ML603_RS08970 (ML603_08970) - 1811911..1812357 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  ML603_RS08975 (ML603_08975) - 1812585..1813301 (-) 717 WP_143927971.1 TIGR00266 family protein -
  ML603_RS08980 (ML603_08980) - 1813437..1813931 (-) 495 WP_138126584.1 carbonic anhydrase -
  ML603_RS08985 (ML603_08985) radA 1814121..1815482 (-) 1362 WP_138126586.1 DNA repair protein RadA Machinery gene
  ML603_RS08990 (ML603_08990) - 1815565..1816011 (-) 447 WP_241067171.1 dUTP diphosphatase -
  ML603_RS08995 (ML603_08995) - 1816119..1816886 (-) 768 WP_015058074.1 epoxyqueuosine reductase QueH -
  ML603_RS09000 (ML603_09000) - 1817005..1818789 (-) 1785 WP_241067172.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49355.66 Da        Isoelectric Point: 6.0944

>NTDB_id=660950 ML603_RS08985 WP_138126586.1 1814121..1815482(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=660950 ML603_RS08985 WP_138126586.1 1814121..1815482(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTCTGGGAGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTAAATCCAGATTTCTTGATTATTGATTCTATCCAGACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGCCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGGACCTTGGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAAGTCTTGAACCCAAGTCAGGTCTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGATTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.726

99.779

0.865
  radA Streptococcus pneumoniae D39

86.504

99.779

0.863
  radA Streptococcus pneumoniae R6

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.504

99.779

0.863
  radA Streptococcus mitis SK321

86.504

99.779

0.863
  radA Streptococcus pneumoniae TIGR4

86.504

99.779

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625