Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG709_RS27570 Genome accession   NZ_CP108455
Coordinates   6037852..6038520 (+) Length   222 a.a.
NCBI ID   WP_250304808.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6032852..6043520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS27550 (OG709_27550) - 6033255..6033485 (-) 231 WP_250304812.1 hypothetical protein -
  OG709_RS27555 (OG709_27555) - 6033920..6036040 (+) 2121 WP_250304811.1 DNA topoisomerase IV subunit B -
  OG709_RS27560 (OG709_27560) - 6036189..6036710 (+) 522 WP_250304810.1 DUF1453 domain-containing protein -
  OG709_RS27565 (OG709_27565) - 6036707..6037855 (+) 1149 WP_266640426.1 histidine kinase -
  OG709_RS27570 (OG709_27570) vraR 6037852..6038520 (+) 669 WP_250304808.1 response regulator transcription factor Regulator
  OG709_RS27575 (OG709_27575) - 6038618..6039088 (+) 471 WP_329167949.1 DUF485 domain-containing protein -
  OG709_RS27580 (OG709_27580) - 6039100..6040692 (+) 1593 WP_250304850.1 cation acetate symporter -
  OG709_RS27585 (OG709_27585) - 6040666..6041388 (-) 723 WP_329167951.1 response regulator -
  OG709_RS27590 (OG709_27590) - 6041599..6042414 (+) 816 WP_250304805.1 ABC transporter ATP-binding protein -
  OG709_RS27595 (OG709_27595) - 6042404..6043327 (+) 924 WP_266640424.1 ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23496.07 Da        Isoelectric Point: 4.7796

>NTDB_id=660946 OG709_RS27570 WP_250304808.1 6037852..6038520(+) (vraR) [Streptomyces sp. NBC_01267]
MTARVVVADDQSVVREGIVMLLGLLPGIEVIGAAKDGVEAVALVAELAPDVVLMDLRMPRCDGVEATRRIRAEHPSTQVV
VLTTFADDDSLFLALQAGARGFLTKDAGGDEIVRAIEDVMAGQAGLSPSVQRLLVERVTSQAPAPAVVDLPDGLTRREAE
ILALIAEGLSNPEISRALHISTATVKTHINNLFAKTGVRDRAQAMRYAYQQGLALPPGTSIT

Nucleotide


Download         Length: 669 bp        

>NTDB_id=660946 OG709_RS27570 WP_250304808.1 6037852..6038520(+) (vraR) [Streptomyces sp. NBC_01267]
ATGACGGCTCGGGTGGTGGTCGCCGACGACCAGTCCGTTGTGCGCGAGGGCATCGTGATGCTGCTGGGGCTGTTGCCGGG
GATCGAGGTGATCGGTGCGGCGAAGGACGGTGTGGAAGCGGTCGCGCTGGTGGCCGAACTCGCCCCCGACGTGGTGCTGA
TGGACCTGCGGATGCCTCGTTGCGACGGAGTGGAGGCGACCCGTCGTATCCGTGCGGAACACCCGTCCACCCAGGTCGTG
GTGCTCACGACGTTCGCGGACGACGACTCGCTCTTCCTCGCGCTGCAGGCCGGAGCCCGTGGATTCCTGACCAAGGACGC
CGGCGGGGACGAGATCGTGCGGGCCATCGAGGACGTGATGGCGGGCCAGGCCGGGCTCTCGCCCAGCGTGCAGCGGCTGC
TCGTCGAGAGGGTCACCTCCCAGGCCCCCGCACCGGCCGTGGTGGATCTGCCCGACGGGCTCACCCGGCGCGAGGCCGAG
ATCCTGGCGCTCATCGCGGAGGGACTCTCCAACCCGGAGATCTCCCGTGCACTGCACATCTCCACGGCCACGGTGAAGAC
GCACATCAACAACCTCTTCGCCAAGACCGGGGTGCGCGACCGTGCGCAGGCGATGCGGTACGCCTATCAGCAGGGACTCG
CACTGCCACCGGGCACATCCATCACCTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.845

95.946

0.392