Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG709_RS27290 Genome accession   NZ_CP108455
Coordinates   5967523..5968653 (+) Length   376 a.a.
NCBI ID   WP_329167918.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5962523..5973653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS27260 (OG709_27260) - 5962667..5963524 (+) 858 WP_329167913.1 AraC family transcriptional regulator -
  OG709_RS27265 (OG709_27265) - 5963535..5964440 (+) 906 WP_329167915.1 AzlC family ABC transporter permease -
  OG709_RS27270 (OG709_27270) - 5964437..5964742 (+) 306 WP_250304871.1 AzlD domain-containing protein -
  OG709_RS27275 (OG709_27275) - 5964806..5965720 (-) 915 WP_326693883.1 hypothetical protein -
  OG709_RS27280 (OG709_27280) - 5965800..5965994 (+) 195 WP_266640458.1 DUF3046 domain-containing protein -
  OG709_RS27285 (OG709_27285) - 5966198..5967349 (+) 1152 WP_284349590.1 AI-2E family transporter -
  OG709_RS27290 (OG709_27290) recA 5967523..5968653 (+) 1131 WP_329167918.1 recombinase RecA Machinery gene
  OG709_RS27295 (OG709_27295) recX 5968657..5969265 (+) 609 WP_250304867.1 recombination regulator RecX -
  OG709_RS27300 (OG709_27300) - 5969457..5969843 (-) 387 WP_329167919.1 rhodanese-like domain-containing protein -
  OG709_RS27305 (OG709_27305) - 5969840..5970391 (-) 552 WP_329167920.1 cysteine dioxygenase -
  OG709_RS27310 (OG709_27310) - 5970587..5972185 (-) 1599 WP_266640454.1 FAD-dependent monooxygenase -
  OG709_RS27315 (OG709_27315) - 5972448..5973323 (-) 876 WP_250304863.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39807.23 Da        Isoelectric Point: 5.5918

>NTDB_id=660943 OG709_RS27290 WP_329167918.1 5967523..5968653(+) (recA) [Streptomyces sp. NBC_01267]
MAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRLGGQVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPEDVAAESASADAAGAPAGDETGKTVPAPAGGKAKTAKTAAAKS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=660943 OG709_RS27290 WP_329167918.1 5967523..5968653(+) (recA) [Streptomyces sp. NBC_01267]
ATGGCAGGTAACGACCGCGAGAAGGCGTTGGACGCCGCTCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGCGAGCGGCCGAACGAACCCATCGAGGTCATCCCCACCGGATCGACCGCCCTCGATGTCGCTCTCGGCGTCG
GCGGACTGCCGCGCGGCCGTGTGGTCGAGGTGTACGGCCCGGAGTCCTCCGGCAAGACGACCCTGACGCTGCACGCGGTG
GCCAATGCGCAGCGGCTCGGCGGTCAGGTGGCCTTCATCGACGCCGAACACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGCGAGCAGGCGCTGGAGATCGTGGACATGCTGATCC
GCTCCGGTGCGCTGGACCTGATCGTCATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGTGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCCCGGCTGATGAGCCAGGCGCTCCGTAAGATCACCAGTGCGCTGAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGTCTCGACATCCGTCGGATCGAGACGCTGAAGGACGGCACCGACGCGGTCGGTAAC
CGCACCCGTGTGAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGAACGGCTTCGTCCGCAAGGCGGGCGCCTGGTACACGTACG
AGGGCGATCAGCTCGGCCAGGGCAAGGAGAACGCCCGTAACTTCCTGAAGGACAACCCCGATCTCGCCAATGAGATCGAG
AAGAAGATCCTGGAGAAGCTGGGCGTCGGTGTCAGGCCGGAGGACGTGGCGGCCGAGTCGGCTTCTGCGGACGCCGCGGG
TGCCCCGGCGGGCGACGAGACCGGGAAGACGGTTCCGGCTCCGGCCGGCGGCAAGGCCAAGACGGCCAAGACCGCCGCGG
CCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.306

91.223

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.431

91.223

0.588
  recA Vibrio cholerae strain A1552

64.431

91.223

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.702

0.582
  recA Staphylococcus aureus strain ATCC 12600

67.178

86.702

0.582
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.245

0.577
  recA Neisseria gonorrhoeae MS11

67.601

85.372

0.577
  recA Neisseria gonorrhoeae strain FA1090

67.601

85.372

0.577
  recA Acinetobacter baumannii D1279779

66.873

85.904

0.574
  recA Acinetobacter baylyi ADP1

66.358

86.17

0.572
  recA Acinetobacter nosocomialis M2

66.563

85.904

0.572
  recA Streptococcus thermophilus LMG 18311

59.551

94.681

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

63.284

89.096

0.564
  recA Streptococcus mutans UA159

61.449

91.755

0.564
  recA Streptococcus mitis NCTC 12261

60.632

92.553

0.561
  recA Streptococcus thermophilus LMD-9

60.405

92.021

0.556
  recA Streptococcus pyogenes NZ131

63.03

87.766

0.553
  recA Glaesserella parasuis strain SC1401

61.424

89.628

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

86.968

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

87.766

0.548
  recA Streptococcus mitis SK321

61.934

88.032

0.545
  recA Helicobacter pylori strain NCTC11637

62.769

86.436

0.543
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.436

0.543
  recA Helicobacter pylori 26695

62.769

86.436

0.543
  recA Streptococcus pneumoniae TIGR4

61.631

88.032

0.543
  recA Streptococcus pneumoniae R36A

61.631

88.032

0.543
  recA Streptococcus pneumoniae Rx1

61.631

88.032

0.543
  recA Streptococcus pneumoniae D39

61.631

88.032

0.543
  recA Streptococcus pneumoniae R6

61.631

88.032

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.317

87.234

0.5