Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG709_RS26620 Genome accession   NZ_CP108455
Coordinates   5809874..5811094 (+) Length   406 a.a.
NCBI ID   WP_250297548.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5804874..5816094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS26605 (OG709_26605) - 5805748..5807163 (+) 1416 WP_250297551.1 sugar porter family MFS transporter -
  OG709_RS26610 (OG709_26610) - 5807192..5808172 (-) 981 WP_250297550.1 LLM class flavin-dependent oxidoreductase -
  OG709_RS26615 (OG709_26615) - 5808234..5809694 (-) 1461 WP_329167827.1 cytosine permease -
  OG709_RS26620 (OG709_26620) pilA 5809874..5811094 (+) 1221 WP_250297548.1 signal recognition particle-docking protein FtsY Machinery gene
  OG709_RS26625 (OG709_26625) - 5811178..5811834 (-) 657 WP_250297547.1 bifunctional DNA primase/polymerase -
  OG709_RS26630 (OG709_26630) - 5812263..5813738 (+) 1476 WP_250297546.1 hypothetical protein -
  OG709_RS26635 (OG709_26635) - 5814049..5815413 (+) 1365 WP_329167831.1 ammonium transporter -
  OG709_RS26640 (OG709_26640) - 5815410..5815748 (+) 339 WP_250297544.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42773.96 Da        Isoelectric Point: 4.4943

>NTDB_id=660940 OG709_RS26620 WP_250297548.1 5809874..5811094(+) (pilA) [Streptomyces sp. NBC_01267]
MEIVILAVVIALVAVGAISGLVVSSRKKKKQLPTAPPSAPTITAPAEPQVGEEAAPPRDESRRTIEEVELPTADEAAGTP
VAVEDPVVAEPLAPQIEIPEPTEGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEETWEEIEDTLLTADVGVAPTQELVE
RLRERVKVLGTRTPQELRTLLREELLNLLGTDFDRAVRTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLG
AADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAFDAVKEGIKEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH
GPLDEVLLVLDATTGQNGLVQARVFAEVVAITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFV
DALVGD

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=660940 OG709_RS26620 WP_250297548.1 5809874..5811094(+) (pilA) [Streptomyces sp. NBC_01267]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCTGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGAAGCAGCTGCCCACGGCACCGCCGAGTGCGCCGACCATCACAGCGCCCGCCGAACCGCAGGTCGGCGAGGAAG
CTGCCCCACCGCGCGACGAGTCGCGCCGCACCATCGAAGAGGTGGAGCTCCCGACGGCCGACGAGGCCGCAGGGACGCCC
GTCGCCGTCGAGGACCCGGTCGTCGCGGAGCCACTGGCTCCGCAGATCGAGATCCCGGAGCCCACCGAGGGCCGTCTCGT
ACGGCTGCGCGCCCGGCTCGCCCGCTCGCAGAACTCGCTCGGCAAGGGACTCCTCACCCTGCTCTCCCGGGACAACCTCG
ACGAGGAGACCTGGGAGGAGATCGAGGACACCCTGCTCACCGCGGATGTCGGTGTCGCGCCGACCCAGGAACTGGTCGAG
CGGCTGCGCGAGCGGGTCAAGGTCCTCGGCACCCGTACACCGCAGGAGCTGCGCACCCTGCTGCGTGAGGAACTGCTGAA
CCTGCTCGGTACGGACTTCGACCGCGCGGTCAGGACCGAGAGCGGTCTGGACACCCCGGGTGTCGTGATGGTCGTCGGCG
TCAACGGCACCGGCAAGACCACCACCACCGGCAAGCTCGCGCGCGTGCTGGTGGCCGACGGCCGCAGCGTGGTGCTCGGC
GCGGCCGACACCTTCCGGGCCGCCGCCGCGGATCAGCTCCAGACCTGGGGTGACCGGGTCGGGGCGCGTACCGTGCGCGG
TCCCGAGGGCGGCGACCCCGCGTCCATCGCCTTCGACGCGGTGAAGGAAGGCATCAAGGAAGGTGCGGACGTCGTCCTCA
TCGACACCGCGGGACGGCTGCACACCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCAC
GGCCCGCTGGACGAGGTGCTGCTCGTACTGGACGCGACGACCGGGCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCGGA
GGTCGTGGCGATCACCGGCATCGTGCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTGATCGCGGTCCAGCGGG
AACTCGGCGTACCGGTGAAGCTGGTCGGTCTCGGTGAAGGACCGGACGACCTGGCGCCGTTCGAGCCGGAGGCGTTCGTG
GACGCCCTGGTCGGAGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(120-185)

SRP54-type protein, GTPase domain (SRP54)

(207-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.667

91.626

0.382