Detailed information NTG0660930

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ML603_RS04050
• Genome accession: NZ_CP092887
• Coordinates: 816402..818501 (-)
• Length: 699 a.a.
• NCBI ID: WP_241067619.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain Karl
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 811402..823501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ML603_RS04020 (ML603_04020)	-	811897..812736 (+)	840	WP_129555803.1	thymidylate synthase	-
ML603_RS04025 (ML603_04025)	-	812817..813314 (+)	498	WP_065957460.1	dihydrofolate reductase	-
ML603_RS04030 (ML603_04030)	-	813334..813504 (+)	171	WP_003054200.1	hypothetical protein	-
ML603_RS04035 (ML603_04035)	clpX	813620..814849 (+)	1230	WP_003054192.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ML603_RS04040 (ML603_04040)	yihA	814859..815458 (+)	600	WP_003061604.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
ML603_RS04045 (ML603_04045)	-	815602..816345 (+)	744	WP_241067617.1	hypothetical protein	-
ML603_RS04050 (ML603_04050)	clpC	816402..818501 (-)	2100	WP_241067619.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
ML603_RS04055 (ML603_04055)	rplJ	819266..819766 (+)	501	WP_003050354.1	50S ribosomal protein L10	-
ML603_RS04060 (ML603_04060)	rplL	819831..820196 (+)	366	WP_003043797.1	50S ribosomal protein L7/L12	-
ML603_RS04065 (ML603_04065)	pbp3	820434..821663 (+)	1230	WP_138125407.1	D-alanyl-D-alanine carboxypeptidase PBP3	-
ML603_RS04070 (ML603_04070)	-	821760..822722 (-)	963	WP_143934927.1	polysaccharide deacetylase family protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77398.06 Da
• Isoelectric Point: 4.8927

>NTDB_id=660930 ML603_RS04050 WP_241067619.1 816402..818501(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGTEQSTSQGHQTKKDGILAKLG
TNLTEEARQGKLDPVIGRNHEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGL
EAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDTVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAHLAA
QHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMNNHSEDQKVTATVNDIAESVERLTGVPVSNMGA
SDLERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKEAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNT
VIIATSNAGFGHQEDENTDQPAIMDRIAPYFRPEFLNRFNGVIEFNHLQKEDLEEIVDLMLAEVNQTIAKKGISLAISDD
AKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHDKN

Nucleotide

• Length: 2100 bp

>NTDB_id=660930 ML603_RS04050 WP_241067619.1 816402..818501(-) (clpC) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGGGGCTA
TCGCAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACACCTGAAGAATTCCAGGCATATCGTCAAACTGGAC
GTCTGAGCGATAAAGGTACTGAACAATCTACATCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCTAAACTTGGC
ACCAACTTAACGGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGACACTGCGGA
AATTTTAGCTCGCCGAACAAAGAATAATCCTGTTCTAGTCGGAGATGCTGGTGTTGGTAAAACAGCTGTGGTTGAAGGGC
TAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCCATTGATATTTCTGGCCTT
GAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTTAAAGAAGCTGGGAATAT
TATTCTCTTCTTTGACGAAATCCATCAAATCCTTGGTGCAGGTTCTACTGGTGGTGACTCTGGGTCTAAAGGATTAGCTG
ATATGCTAAAACCTGCTCTTTCCCGTGGTGAATTGACACTGATTGGTGCCACAACTCAAGATGAATACCGCAATACCATT
TTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAACGCACCGTCTGCTGAGGACACCTTCCATATTTT
AATGGGAATCCGAAATCTTTACGAACAACACCATAATGTTATCCTTCCGGATACTGTTCTTAAAGCTGCGATTGACTATT
CTATTCAGTACATTCCTCAACGTAGTTTACCAGATAAAGCGATTGACTTAGTAGATATGACTGCTGCGCATTTAGCTGCT
CAGCATCCTGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACCACTCAAAAGAATATCCAAGAAGAGGCTGTGGCTAA
GGAAGATTTTGAGAGAGCTTTAACCGCTAAAACTCGAATTGAAGAATTGCAAAAACAAATGAACAACCATAGCGAAGACC
AAAAGGTTACTGCTACTGTCAATGACATTGCAGAATCTGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAATATGGGAGCT
AGTGATTTGGAAAGACTCAAAGAAATTAGCAACCGCTTAAAAGGACACGTGATTGGCCAAGATGGAGCTGTTGAAGCTGT
GGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGATGACGGCAATCGTCCTATCGGTTCCTTCCTCTTTGTTGGACCAA
CAGGTGTTGGTAAGACAGAATTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGAGGCTATTATTCGACTTGAC
ATGTCCGAATACAGTGATCGTACCGCTGTGTCCAAGCTAATAGGGACAACTGCCGGTTATGTCGGTTATGATGATAATAA
CAATACGTTAACGGAACGTGTTCGTCGCAACCCGTATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCGATCCGCAAG
TCATTACCCTTCTTCTCCAAGTACTAGATGATGGCCGATTAACAGATGGTCAGGGAAATACCATCAACTTTAAAAACACT
GTTATCATTGCTACTTCTAATGCTGGATTTGGGCATCAAGAAGATGAAAATACTGATCAACCTGCTATTATGGACCGTAT
TGCGCCTTACTTTAGACCAGAGTTTCTCAATCGTTTCAATGGGGTTATCGAATTCAATCATCTGCAAAAAGAAGACTTAG
AAGAAATTGTTGATTTAATGTTAGCGGAAGTTAATCAAACTATAGCTAAAAAAGGGATCAGCTTAGCTATCTCTGATGAT
GCTAAAGCTCACTTGATTGAATTAGGTTATGACCACGCAATGGGAGTTCGACCATTACGCCGTGTCATCGAGCAAGAAAT
CCGAGACCGCATTACAGACTTTTATCTCGATCACCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAAGGACAGTTAG
TCATTCACGACAAAAACTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA lid domain (AAA_lid_9) (259-353)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-600)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.391	100	0.481
clpE	Streptococcus mutans UA159	46.544	100	0.472
clpE	Streptococcus pneumoniae Rx1	45.911	99.714	0.458
clpE	Streptococcus pneumoniae D39	45.911	99.714	0.458
clpE	Streptococcus pneumoniae R6	45.911	99.714	0.458
clpE	Streptococcus pneumoniae TIGR4	45.833	99.571	0.456
clpC	Bacillus subtilis subsp. subtilis str. 168	44.341	92.275	0.409
clpC	Streptococcus pneumoniae Rx1	40.943	97.139	0.398
clpC	Streptococcus pneumoniae D39	40.943	97.139	0.398
clpC	Streptococcus pneumoniae TIGR4	40.795	97.139	0.396
clpC	Streptococcus thermophilus LMG 18311	42.903	88.698	0.381
clpC	Streptococcus mutans UA159	42.742	88.698	0.379
clpC	Streptococcus thermophilus LMD-9	42.718	88.412	0.378
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.165	88.555	0.373