Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ613_RS16640 Genome accession   NZ_CP092860
Coordinates   3316552..3317166 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter braakii strain P1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3311552..3322166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ613_RS16625 (MJ613_16610) helD 3311776..3313830 (-) 2055 WP_185654331.1 DNA helicase IV -
  MJ613_RS16630 (MJ613_16615) - 3313956..3314402 (+) 447 WP_016152485.1 YccF domain-containing protein -
  MJ613_RS16635 (MJ613_16620) yccS 3314421..3316574 (+) 2154 WP_049283246.1 YccS family putative transporter -
  MJ613_RS16640 (MJ613_16625) sxy/tfoX 3316552..3317166 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  MJ613_RS16645 (MJ613_16630) sulA 3317384..3317893 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  MJ613_RS16650 (MJ613_16635) ompA 3318251..3319309 (+) 1059 WP_016156137.1 porin OmpA -
  MJ613_RS16655 (MJ613_16640) matP 3319408..3319860 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  MJ613_RS16660 (MJ613_16645) - 3320046..3321806 (+) 1761 WP_185654330.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=660866 MJ613_RS16640 WP_047501141.1 3316552..3317166(-) (sxy/tfoX) [Citrobacter braakii strain P1]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=660866 MJ613_RS16640 WP_047501141.1 3316552..3317166(-) (sxy/tfoX) [Citrobacter braakii strain P1]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAACGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686