Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MMB18_RS10725 Genome accession   NZ_CP092851
Coordinates   2333057..2334433 (-) Length   458 a.a.
NCBI ID   WP_039342661.1    Uniprot ID   A0A4R4C5L8
Organism   Burkholderia contaminans strain B17-01563-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328057..2339433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMB18_RS10705 (MMB18_10705) cls 2328392..2329831 (+) 1440 WP_039342669.1 cardiolipin synthase -
  MMB18_RS10710 (MMB18_10710) - 2329892..2330371 (-) 480 WP_039342668.1 glutathione peroxidase -
  MMB18_RS10715 (MMB18_10715) - 2330508..2332445 (+) 1938 WP_039342666.1 ATP-binding cassette domain-containing protein -
  MMB18_RS10720 (MMB18_10720) - 2332644..2332910 (-) 267 WP_039342663.1 DUF2866 domain-containing protein -
  MMB18_RS10725 (MMB18_10725) radA 2333057..2334433 (-) 1377 WP_039342661.1 DNA repair protein RadA Machinery gene
  MMB18_RS10730 (MMB18_10730) alr 2334445..2335515 (-) 1071 WP_039342660.1 alanine racemase -
  MMB18_RS10735 (MMB18_10735) lplT 2335734..2337041 (+) 1308 WP_039342658.1 lysophospholipid transporter LplT -
  MMB18_RS10740 (MMB18_10740) thiD 2337100..2337909 (+) 810 WP_039342655.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MMB18_RS10745 (MMB18_10745) - 2337928..2338893 (-) 966 WP_039342652.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48761.17 Da        Isoelectric Point: 6.9555

>NTDB_id=660811 MMB18_RS10725 WP_039342661.1 2333057..2334433(-) (radA) [Burkholderia contaminans strain B17-01563-1]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASARRALYISGEESAAQIALRAQRLALLDGGAPADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIAAFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=660811 MMB18_RS10725 WP_039342661.1 2333057..2334433(-) (radA) [Burkholderia contaminans strain B17-01563-1]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAGGCCTGGAACACGCTGGTTGAATCGGTCGCCGAATCGCCCGCTGCCCATCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCGGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGCGCGGCGCGCACTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGCCGGCGGATGAGCTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGATACCGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGTCTGCGCGGCGTCGCGAATCCGTCCGCCCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGTCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACGGCGCATGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGGCCTTCGACCAGGACGTGTTCCTGAATGCCGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTCGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAACGGCTGCGCGAGGCGGCGAAGCTCGGTTTTACGTCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAACAGGCGATCGACCGCG
TGCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R4C5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465