Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG295_RS20155 Genome accession   NZ_CP108442
Coordinates   4484651..4485628 (+) Length   325 a.a.
NCBI ID   WP_371678124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4479651..4490628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS20135 (OG295_20150) - 4480527..4481240 (+) 714 WP_371678119.1 TetR/AcrR family transcriptional regulator -
  OG295_RS20140 (OG295_20155) - 4481332..4482876 (+) 1545 WP_371678120.1 MFS transporter -
  OG295_RS20145 (OG295_20160) - 4483008..4483790 (+) 783 WP_371678121.1 dioxygenase -
  OG295_RS20150 (OG295_20165) - 4483787..4484164 (-) 378 WP_371678122.1 hypothetical protein -
  OG295_RS20155 (OG295_20170) rpoS 4484651..4485628 (+) 978 WP_371678124.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG295_RS20160 (OG295_20175) - 4485695..4486696 (-) 1002 WP_371678125.1 helix-turn-helix transcriptional regulator -
  OG295_RS20165 (OG295_20180) - 4486759..4488342 (+) 1584 WP_371678126.1 MFS transporter -
  OG295_RS20170 (OG295_20185) - 4488474..4489241 (+) 768 WP_371678127.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG295_RS20175 (OG295_20190) pfkB 4489238..4490179 (+) 942 WP_371678128.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36593.24 Da        Isoelectric Point: 4.9036

>NTDB_id=660762 OG295_RS20155 WP_371678124.1 4484651..4485628(+) (rpoS) [Streptomyces sp. NBC_01276]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAREVELSQIIEAGVYARQILDEATEREGDAPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGREPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=660762 OG295_RS20155 WP_371678124.1 4484651..4485628(+) (rpoS) [Streptomyces sp. NBC_01276]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCCGATCGCGACCT
GGTCGGCATGTACCTCGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAGGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTGTACGCCCGGCAGATCCTCGACGAGGCGACGGAGCGCGAGGGGGACGCCCCCGCGCGCGAGGAGCTGGAG
GCCCTGGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGTTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCGCCG
CTATCCGCGCAGCGGACTGCCCCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAACTCGGCCGGATCCGCCGGGTGCAGCGCGAGTTCAACCGCGA
GAACGGCCGCGAGCCGGAGCACGCCGAGATCGCCGCCGAACTCGACTCCACCGAGAAGCGCGTCGGCGACGTCCTCGACT
GGGCGCGTGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGTGACACCCAGTTCGGCGACCTGCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTCCTCGGCAAGCTGGACCA
GCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTCACCCGCGAGAGGATCCGGCAGATCGAGAAGCACGCGCTGCTCGAACTCAAGCGCATGGCCCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.667

92.308

0.375