Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG295_RS19480 Genome accession   NZ_CP108442
Coordinates   4353861..4355279 (-) Length   472 a.a.
NCBI ID   WP_266839796.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4348861..4360279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS19455 (OG295_19465) - 4349024..4349584 (-) 561 WP_030236813.1 SigE family RNA polymerase sigma factor -
  OG295_RS19460 (OG295_19470) - 4349812..4350732 (-) 921 WP_371678012.1 A/G-specific adenine glycosylase -
  OG295_RS19465 (OG295_19475) - 4350761..4351369 (-) 609 WP_371678013.1 phosphatase PAP2 family protein -
  OG295_RS19470 (OG295_19480) - 4351593..4352330 (+) 738 WP_371678014.1 hypothetical protein -
  OG295_RS19475 (OG295_19485) disA 4352537..4353661 (-) 1125 WP_030236804.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG295_RS19480 (OG295_19490) radA/sms 4353861..4355279 (-) 1419 WP_266839796.1 DNA repair protein RadA Machinery gene
  OG295_RS19485 (OG295_19495) - 4355427..4357205 (+) 1779 WP_371678015.1 hypothetical protein -
  OG295_RS19490 (OG295_19500) - 4357211..4358029 (-) 819 WP_371678016.1 hypothetical protein -
  OG295_RS19495 (OG295_19505) - 4358092..4359027 (+) 936 WP_371678017.1 Ppx/GppA family phosphatase -
  OG295_RS19500 (OG295_19510) - 4359079..4359729 (+) 651 WP_371681235.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 49283.45 Da        Isoelectric Point: 8.2626

>NTDB_id=660761 OG295_RS19480 WP_266839796.1 4353861..4355279(-) (radA/sms) [Streptomyces sp. NBC_01276]
MAAARTSRSSAKDRPSYRCSECGWTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTG
VDELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATGDHRTLYVTGEESASQVRLRADRINALNDHLFLAAETDL
SAVLGHLDAVKPSLLVLDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDV
VLSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTV
DSQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIG
EVGLAGEVRRVTGVQRRLSEAHRLGFTHALVPADPGKVPAGMKVTEVADVGDALRVLPRGRSRTPAKERAAE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=660761 OG295_RS19480 WP_266839796.1 4353861..4355279(-) (radA/sms) [Streptomyces sp. NBC_01276]
ATGGCTGCTGCCCGTACCTCCCGCTCGTCCGCCAAGGACCGGCCGTCCTACCGTTGCTCCGAGTGCGGCTGGACGACCGC
GAAATGGCTCGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACCGTCGAGGAGATGGGCGGGGCGCCCGCCGTACGGACCA
CCGCGGCCGGCCGCGTCTCCGCGCCCGCCCTGCCCATCGCCCAGGTCGACGGCCGCACCGCGACCGCGCGCAGCACCGGC
GTCGACGAACTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCGGGCGCCGTCGTCCTCCTCGCCGGCGAGCCCGGCGTCGG
CAAGTCGACCCTGCTGCTCGACGTCGCGGCGAAGGCGGCCACCGGCGACCACCGCACCCTCTACGTCACGGGCGAGGAGT
CCGCGAGCCAGGTCCGGCTGCGCGCCGACCGGATCAACGCCCTCAACGACCACCTCTTCCTCGCCGCCGAGACCGACCTG
TCCGCCGTACTGGGCCACCTCGACGCGGTGAAGCCCTCCCTGCTGGTCCTGGACTCCGTACAGACCATCGCCTCCCCCGA
GATCGACGGCGCGCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGCGCGCTGATCCGCGCGTCCAAGGAACGGGGCA
TGGCCACCCTCCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGCCCCCGTCTGCTGGAGCACCTGGTGGACGTG
GTCCTCAGCTTCGAGGGCGACCGCCACGCGCGACTGCGCCTCGTACGCGGTGTGAAGAACCGCTACGGCGCCACCGACGA
GGTCGGCTGCTTCGAGCTCCACGACGAGGGCATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTGACCCGGCGGGCCG
AGGCGGTGCCGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTC
GACTCGCAGATCCCCTCCCCTCGCCGCACCACCTCCGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGA
GCAGCGCGGGCGGATCACCGCGCTCGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGCGTGAAGCTCACCGAACCCG
CCGCCGACCTCGCGATCGCGCTCGCGCTGGCCTCGGCCGCCAGTGACGTGCCGCTGCCGAAGAACCTCGTCGCCATCGGG
GAGGTCGGGCTCGCCGGCGAGGTGAGGCGGGTGACGGGTGTGCAGCGGCGGCTGTCCGAGGCGCACCGGCTGGGCTTCAC
GCACGCGTTGGTGCCGGCGGATCCGGGGAAGGTTCCCGCGGGGATGAAGGTGACCGAGGTCGCGGACGTGGGCGACGCGC
TGCGGGTCCTGCCGCGCGGCCGCTCCCGCACCCCGGCGAAGGAGCGCGCAGCGGAATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(86-226)

Subunit ChlI of Mg-chelatase (ChlI)

(374-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.493

96.186

0.428
  radA Streptococcus pneumoniae Rx1

42.129

95.551

0.403
  radA Streptococcus pneumoniae D39

42.129

95.551

0.403
  radA Streptococcus pneumoniae R6

42.129

95.551

0.403
  radA Streptococcus pneumoniae TIGR4

42.129

95.551

0.403
  radA Streptococcus mitis SK321

43.56

90.466

0.394
  radA Streptococcus mitis NCTC 12261

43.56

90.466

0.394