Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG295_RS09420 Genome accession   NZ_CP108442
Coordinates   2259525..2260742 (-) Length   405 a.a.
NCBI ID   WP_371676473.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254525..2265742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS09400 (OG295_09430) - 2254955..2255293 (-) 339 WP_030227390.1 P-II family nitrogen regulator -
  OG295_RS09405 (OG295_09435) - 2255290..2256636 (-) 1347 WP_371676470.1 ammonium transporter -
  OG295_RS09410 (OG295_09440) - 2256866..2258362 (-) 1497 WP_371676471.1 hypothetical protein -
  OG295_RS09415 (OG295_09445) - 2258770..2259438 (+) 669 WP_371676472.1 bifunctional DNA primase/polymerase -
  OG295_RS09420 (OG295_09450) pilA 2259525..2260742 (-) 1218 WP_371676473.1 signal recognition particle-docking protein FtsY Machinery gene
  OG295_RS09425 (OG295_09455) - 2260888..2262342 (+) 1455 WP_371676474.1 cytosine permease -
  OG295_RS09430 (OG295_09460) - 2262405..2263391 (+) 987 WP_371676475.1 LLM class flavin-dependent oxidoreductase -
  OG295_RS09435 (OG295_09465) - 2263437..2264867 (-) 1431 WP_371676476.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42513.62 Da        Isoelectric Point: 4.3833

>NTDB_id=660735 OG295_RS09420 WP_371676473.1 2259525..2260742(-) (pilA) [Streptomyces sp. NBC_01276]
MEILILAVVIALVAVGVISGLVVSSRKKKQLPPTAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPTAEAEAPV
EEPAAEPEAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPADLRTLLKEELLTLVGTDFDRAVKTESGVDTPAVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEVLLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=660735 OG295_RS09420 WP_371676473.1 2259525..2260742(-) (pilA) [Streptomyces sp. NBC_01276]
ATGGAAATCCTGATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGTGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCCACGGCGCCGCCGAGCACGCCGACCATCACTGCCCCGCCTGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACCATCGAGGAGGTCGGGCTCCCGACGGCGGAGGCCGAGGCTCCGGTC
GAGGAGCCGGCGGCGGAGCCCGAGGCCCCGGCCGCACCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTCCG
GCTGCGCGCACGGCTCGCCCGTTCCCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTCGGCGTCGTGCCGACCCAGGAGCTGGTGGACCGG
CTCCGGGAGCGGGTCAAGGTGCTCGGCACCCGTACCCCCGCCGATCTGCGCACGCTGCTGAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCCGTGAAGACCGAGAGCGGCGTGGACACCCCCGCCGTCGTCATGGTCGTCGGTGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGTGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCC
GCCGACACCTTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTCGGGGCGCGCACCGTGCGCGGCCC
CGAGGGCGGCGACCCCGCCTCCATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCGGACGTGGTCCTCATCG
ACACAGCCGGCCGCCTGCACACCAAGACCGGTCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGC
CCGCTGGACGAGGTCCTGCTGGTCCTCGACGCCACCACCGGCCAGAACGGCCTGACCCAGGCGCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTCCTGACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TCGGCGTCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCCCGGACGACCTGGCCCCCTTCGAGCCGGAAGCCTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(205-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.467

100

0.402