Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG295_RS08530 Genome accession   NZ_CP108442
Coordinates   2045352..2046143 (+) Length   263 a.a.
NCBI ID   WP_030239576.1    Uniprot ID   A0A2K8PBD3
Organism   Streptomyces sp. NBC_01276     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040352..2051143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS08515 (OG295_08550) - 2040418..2041158 (-) 741 WP_371676343.1 hypothetical protein -
  OG295_RS08520 (OG295_08555) - 2041298..2044195 (-) 2898 WP_371676344.1 vitamin B12-dependent ribonucleotide reductase -
  OG295_RS08525 (OG295_08560) nrdR 2044331..2044846 (-) 516 WP_030239578.1 transcriptional regulator NrdR -
  OG295_RS08530 (OG295_08565) dinR/lexA 2045352..2046143 (+) 792 WP_030239576.1 transcriptional repressor LexA Regulator
  OG295_RS08535 (OG295_08570) - 2046317..2048287 (-) 1971 WP_371676345.1 ATP-dependent DNA helicase -
  OG295_RS08540 (OG295_08575) - 2048340..2050196 (-) 1857 WP_371676346.1 IucA/IucC family siderophore biosynthesis protein -
  OG295_RS08545 (OG295_08580) - 2050380..2051081 (-) 702 WP_371676347.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28532.31 Da        Isoelectric Point: 7.4242

>NTDB_id=660730 OG295_RS08530 WP_030239576.1 2045352..2046143(+) (dinR/lexA) [Streptomyces sp. NBC_01276]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=660730 OG295_RS08530 WP_030239576.1 2045352..2046143(+) (dinR/lexA) [Streptomyces sp. NBC_01276]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAGCCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACCGACCGGCAGCGGAGGGTCATCGAGGTCATCCGGGACTCGGTGCAGAGGCGCGGCTACCCGCCG
TCGATGCGCGAGATCGGCCAGGCCGTGGGCCTCTCCAGCACCTCCTCCGTGGCACACCAGCTCATGGCCCTGGAGCGCAA
GGGATTCCTGCGCCGCGACCCGCACCGTCCCCGCGCCTACGAGGTGCGCGGCTCGGACCAGCCGAGTTCGCAGCCCACCG
ACACCACGGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCCGCCGGCGGTCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAACTGTTCGTCCTCAAGGTCGTCGGCGACTC
GATGATCGAAGCCGCCATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCCGGCGCGAAGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAAGCCACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8PBD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376