Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MLD62_RS20545 Genome accession   NZ_CP092833
Coordinates   4047823..4048257 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain LX30     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4042823..4053257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS20530 - 4043966..4044523 (+) 558 WP_002128898.1 PadR family transcriptional regulator -
  MLD62_RS20535 metE 4045064..4047352 (+) 2289 WP_241138592.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  MLD62_RS20540 comJ 4047394..4047783 (-) 390 WP_085312265.1 competence protein ComJ -
  MLD62_RS20545 nucA/comI 4047823..4048257 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  MLD62_RS20550 - 4048494..4049237 (+) 744 WP_002014816.1 DUF3967 domain-containing protein -
  MLD62_RS20555 - 4049297..4050571 (-) 1275 WP_002014814.1 HAMP domain-containing sensor histidine kinase -
  MLD62_RS20560 - 4050882..4051082 (+) 201 WP_000929276.1 hypothetical protein -
  MLD62_RS20565 - 4051317..4052480 (+) 1164 WP_085312266.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=660721 MLD62_RS20545 WP_002014817.1 4047823..4048257(-) (nucA/comI) [Bacillus mycoides strain LX30]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=660721 MLD62_RS20545 WP_002014817.1 4047823..4048257(-) (nucA/comI) [Bacillus mycoides strain LX30]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542