Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   MLD62_RS20500 Genome accession   NZ_CP092833
Coordinates   4038493..4038951 (+) Length   152 a.a.
NCBI ID   WP_137057575.1    Uniprot ID   -
Organism   Bacillus mycoides strain LX30     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4033493..4043951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS20485 - 4034157..4034393 (+) 237 WP_002014830.1 hypothetical protein -
  MLD62_RS20490 - 4034560..4036668 (-) 2109 WP_002014829.1 polyphosphate kinase -
  MLD62_RS20495 - 4036777..4038351 (-) 1575 WP_137057576.1 Ppx/GppA family phosphatase -
  MLD62_RS20500 kre 4038493..4038951 (+) 459 WP_137057575.1 YkyB family protein Regulator
  MLD62_RS20505 - 4038984..4039646 (-) 663 WP_241138591.1 YkyA family protein -
  MLD62_RS20510 - 4040199..4040852 (-) 654 WP_002033822.1 diguanylate cyclase -
  MLD62_RS20515 - 4041015..4041248 (+) 234 WP_002014824.1 phage holin -
  MLD62_RS20520 - 4041280..4041780 (-) 501 WP_002033821.1 hypothetical protein -
  MLD62_RS20525 - 4042333..4043874 (+) 1542 WP_002014821.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17739.39 Da        Isoelectric Point: 10.6319

>NTDB_id=660720 MLD62_RS20500 WP_137057575.1 4038493..4038951(+) (kre) [Bacillus mycoides strain LX30]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKNLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=660720 MLD62_RS20500 WP_137057575.1 4038493..4038951(+) (kre) [Bacillus mycoides strain LX30]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AGGAAAAAAATTTAAGCGAACCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487