Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MLD62_RS10020 Genome accession   NZ_CP092833
Coordinates   1964831..1965118 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain LX30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959831..1970118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS10000 - 1961014..1961211 (+) 198 WP_085310559.1 DUF4083 domain-containing protein -
  MLD62_RS10005 - 1961242..1961703 (+) 462 WP_002135797.1 NUDIX hydrolase -
  MLD62_RS10010 nadE 1961748..1962566 (-) 819 WP_002064947.1 ammonia-dependent NAD(+) synthetase -
  MLD62_RS10015 - 1962831..1964711 (+) 1881 WP_085310561.1 ABC transporter permease -
  MLD62_RS10020 abrB 1964831..1965118 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MLD62_RS10025 - 1965454..1966404 (+) 951 WP_085310562.1 serine protease -
  MLD62_RS10030 - 1966445..1966753 (-) 309 WP_001259916.1 helix-turn-helix transcriptional regulator -
  MLD62_RS10035 - 1966861..1967796 (+) 936 WP_085310564.1 aldo/keto reductase -
  MLD62_RS10040 - 1967846..1968049 (+) 204 WP_002012406.1 hypothetical protein -
  MLD62_RS10045 - 1968080..1968304 (-) 225 WP_002064959.1 hypothetical protein -
  MLD62_RS10050 - 1968389..1968736 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  MLD62_RS10055 - 1968933..1969467 (+) 535 Protein_1899 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=660712 MLD62_RS10020 WP_002012401.1 1964831..1965118(+) (abrB) [Bacillus mycoides strain LX30]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=660712 MLD62_RS10020 WP_002012401.1 1964831..1965118(+) (abrB) [Bacillus mycoides strain LX30]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAGCCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGTGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558