Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MLD62_RS07940 Genome accession   NZ_CP092833
Coordinates   1545399..1546001 (-) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus mycoides strain LX30     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540399..1551001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS07920 dnaD 1540705..1541412 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  MLD62_RS07925 nth 1541428..1542075 (+) 648 WP_241138966.1 endonuclease III -
  MLD62_RS07930 - 1542079..1542597 (+) 519 WP_085310111.1 YpoC family protein -
  MLD62_RS07935 - 1542624..1545332 (-) 2709 WP_214931708.1 penicillin-binding protein 1A -
  MLD62_RS07940 recU 1545399..1546001 (-) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  MLD62_RS07945 - 1546105..1547130 (+) 1026 WP_137058542.1 DUF2515 domain-containing protein -
  MLD62_RS30645 - 1547474..1547620 (-) 147 WP_307838389.1 phage portal protein -
  MLD62_RS07950 - 1547739..1547981 (+) 243 WP_002030820.1 hypothetical protein -
  MLD62_RS07955 - 1547997..1548341 (+) 345 WP_137056859.1 YppE family protein -
  MLD62_RS07960 - 1548520..1548711 (-) 192 WP_002030817.1 YppF family protein -
  MLD62_RS07965 - 1548888..1549526 (+) 639 WP_085310119.1 YppG family protein -
  MLD62_RS07970 - 1549683..1550147 (+) 465 WP_085310121.1 CotD family spore coat protein -
  MLD62_RS07975 - 1550204..1550758 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=660711 MLD62_RS07940 WP_000155584.1 1545399..1546001(-) (recU) [Bacillus mycoides strain LX30]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=660711 MLD62_RS07940 WP_000155584.1 1545399..1546001(-) (recU) [Bacillus mycoides strain LX30]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63