Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MLD62_RS06560 Genome accession   NZ_CP092833
Coordinates   1289274..1289597 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain LX30     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284274..1294597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS06535 - 1284486..1285772 (+) 1287 WP_241138949.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MLD62_RS06540 - 1285970..1286539 (+) 570 WP_085309861.1 signal peptidase I -
  MLD62_RS06545 - 1286603..1287190 (+) 588 WP_085309863.1 CalY family protein -
  MLD62_RS06550 - 1287352..1288101 (+) 750 WP_241138950.1 DUF4047 domain-containing protein -
  MLD62_RS06555 calY 1288598..1289191 (+) 594 WP_085309867.1 biofilm matrix protein CalY -
  MLD62_RS06560 sinR 1289274..1289597 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  MLD62_RS06565 - 1289677..1289811 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  MLD62_RS06570 inhA1 1290154..1292541 (+) 2388 WP_085309869.1 M6 family metalloprotease immune inhibitor InhA1 -
  MLD62_RS06575 - 1292699..1294066 (+) 1368 WP_085309872.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=660709 MLD62_RS06560 WP_002011473.1 1289274..1289597(-) (sinR) [Bacillus mycoides strain LX30]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=660709 MLD62_RS06560 WP_002011473.1 1289274..1289597(-) (sinR) [Bacillus mycoides strain LX30]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682