Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG723_RS28200 Genome accession   NZ_CP108439
Coordinates   6049609..6050400 (-) Length   263 a.a.
NCBI ID   WP_327278911.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01278     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6044609..6055400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS28185 (OG723_28220) - 6044649..6045350 (+) 702 WP_329314705.1 GNAT family N-acetyltransferase -
  OG723_RS28190 (OG723_28225) - 6045527..6047443 (+) 1917 WP_329314707.1 IucA/IucC family siderophore biosynthesis protein -
  OG723_RS28195 (OG723_28230) - 6047496..6049466 (+) 1971 WP_328763963.1 ATP-dependent DNA helicase -
  OG723_RS28200 (OG723_28235) dinR/lexA 6049609..6050400 (-) 792 WP_327278911.1 transcriptional repressor LexA Regulator
  OG723_RS28205 (OG723_28240) nrdR 6050873..6051385 (+) 513 WP_327278912.1 transcriptional regulator NrdR -
  OG723_RS28210 (OG723_28245) - 6051514..6054402 (+) 2889 WP_327278913.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28557.28 Da        Isoelectric Point: 7.4758

>NTDB_id=660698 OG723_RS28200 WP_327278911.1 6049609..6050400(-) (dinR/lexA) [Streptomyces sp. NBC_01278]
MTTTADSATITAQNRSQSRHEPVHPMNDASLNQEAEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=660698 OG723_RS28200 WP_327278911.1 6049609..6050400(-) (dinR/lexA) [Streptomyces sp. NBC_01278]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACACGAGCCGGTGCATCCCATGAA
CGACGCAAGTCTGAACCAGGAGGCGGAGCCCGCACGCCCCGCACGCTCGCTTCCAGGGCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCGGTGCAGCGGCGGGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCGCACCAGCTCATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCGACGG
ACACCACCGGCAAGCCCGCCGCCTCGTACGTCCCCCTGGTCGGGCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAA
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTCTTCGTCCTCAAGGTCGTAGGCGACTC
GATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACGGTCCGTCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGG
CCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCCGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376