Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MLD62_RS00220 Genome accession   NZ_CP092833
Coordinates   40488..40772 (-) Length   94 a.a.
NCBI ID   WP_002063374.1    Uniprot ID   J9BXR7
Organism   Bacillus mycoides strain LX30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35488..45772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS00185 tmk 35642..36268 (+) 627 WP_002009634.1 dTMP kinase -
  MLD62_RS00190 holB 36304..37287 (+) 984 WP_002009636.1 DNA polymerase III subunit delta' -
  MLD62_RS00195 - 37293..38120 (+) 828 WP_002009637.1 stage 0 sporulation family protein -
  MLD62_RS00200 yabA 38135..38485 (+) 351 WP_002009639.1 DNA replication initiation control protein YabA -
  MLD62_RS00205 - 38606..39346 (+) 741 WP_002029328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MLD62_RS00210 - 39333..39623 (+) 291 WP_002130207.1 GIY-YIG nuclease family protein -
  MLD62_RS00215 rsmI 39592..40467 (+) 876 WP_002138891.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MLD62_RS00220 abrB 40488..40772 (-) 285 WP_002063374.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MLD62_RS00225 metG 41267..43276 (+) 2010 WP_085308552.1 methionine--tRNA ligase -
  MLD62_RS00230 - 43442..44209 (+) 768 WP_085308555.1 TatD family hydrolase -
  MLD62_RS00235 rnmV 44470..45027 (+) 558 WP_002029323.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7283

>NTDB_id=660694 MLD62_RS00220 WP_002063374.1 40488..40772(-) (abrB) [Bacillus mycoides strain LX30]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDEEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QVLNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=660694 MLD62_RS00220 WP_002063374.1 40488..40772(-) (abrB) [Bacillus mycoides strain LX30]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGCACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTACGTTGATGAAGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAA
CAAGTCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J9BXR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.979

100

0.83