Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKO97_RS03970 Genome accession   NZ_CP092832
Coordinates   978899..980260 (-) Length   453 a.a.
NCBI ID   WP_241104775.1    Uniprot ID   -
Organism   Flavobacterium sp. HJ-32-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973899..985260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKO97_RS03960 (MKO97_03960) - 975241..976875 (-) 1635 WP_241104773.1 DUF4139 domain-containing protein -
  MKO97_RS03965 (MKO97_03965) - 976925..978892 (-) 1968 WP_241104774.1 transglycosylase domain-containing protein -
  MKO97_RS03970 (MKO97_03970) radA 978899..980260 (-) 1362 WP_241104775.1 DNA repair protein RadA Machinery gene
  MKO97_RS03975 (MKO97_03975) - 980260..981402 (-) 1143 WP_241104776.1 alpha/beta hydrolase -
  MKO97_RS03980 (MKO97_03980) - 981453..982418 (-) 966 WP_241104777.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MKO97_RS03985 (MKO97_03985) panD 982423..982773 (-) 351 WP_241104778.1 aspartate 1-decarboxylase -
  MKO97_RS03990 (MKO97_03990) panC 982787..983635 (-) 849 WP_241104779.1 pantoate--beta-alanine ligase -
  MKO97_RS03995 (MKO97_03995) - 983746..984552 (+) 807 WP_241104780.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49985.40 Da        Isoelectric Point: 6.0310

>NTDB_id=660688 MKO97_RS03970 WP_241104775.1 978899..980260(-) (radA) [Flavobacterium sp. HJ-32-4]
MSKIRTAFFCQNCGTQFPKWQGQCTACKQWNTIVEEVIQKEEKTSWKPTATETRKAAKPLRVKEIDSAQEFRLPTGDGEL
DRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALLLPFRTLYVSGEESQKQIKMRADRITQREDNCYILTETKTQQIFRQV
AELDPEILIIDSIQTLHTDYIDSSPGSISQIRECTAELIKFAKESNVPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISHREEELSGTAIATTLEGMRPLMIEIQALVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIAVGKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFISKYNKVSLKDTLIRVHLVSNIEEVASVLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=660688 MKO97_RS03970 WP_241104775.1 978899..980260(-) (radA) [Flavobacterium sp. HJ-32-4]
ATGTCAAAAATACGAACGGCTTTTTTCTGCCAGAACTGCGGCACCCAATTCCCGAAGTGGCAAGGTCAGTGCACCGCCTG
TAAACAATGGAACACCATTGTAGAGGAAGTCATCCAGAAAGAAGAGAAAACCAGTTGGAAACCGACCGCTACCGAAACCC
GGAAGGCGGCAAAACCCCTTCGCGTAAAAGAAATAGATTCCGCCCAGGAATTCCGTCTGCCAACCGGCGATGGTGAACTC
GACCGCGTACTCGGCGGGGGCCTGGTACCCGGATCGTTGACCCTGTTAGGGGGCGAACCCGGTATTGGCAAATCTACGTT
ACTGCTGCAGATCGCGCTGCTGCTTCCCTTCCGAACTCTTTATGTATCAGGCGAGGAAAGCCAGAAACAGATCAAGATGC
GCGCTGACCGGATCACCCAGCGCGAAGACAATTGCTACATCCTGACCGAAACCAAGACGCAGCAGATCTTCCGACAGGTC
GCGGAACTCGATCCTGAAATCCTGATCATCGACTCGATCCAGACGCTGCATACCGATTATATCGATTCGTCGCCCGGAAG
CATTTCCCAAATTCGCGAGTGTACCGCCGAATTAATCAAATTCGCGAAAGAAAGCAACGTGCCTGTTATCCTGATTGGCC
ATATCACCAAAGACGGTACCATCGCCGGGCCGAAGATCCTCGAGCACATGGTCGACACCGTCCTGCAGTTTGAAGGCGAC
CGCAACCACGTCTACCGCATCCTGCGATCCCTTAAGAACCGCTTTGGTTCCACTGCGGAACTGGGGATTTACGAAATGCA
GGGTTCCGGACTTCGGGAAGTATCCAACCCGTCCGAAATCCTGATTTCCCATCGGGAAGAGGAATTGTCGGGCACCGCCA
TTGCCACCACGTTGGAAGGCATGCGCCCGCTGATGATTGAAATCCAGGCCCTGGTGAGTTCAGCCGTATACGGAACACCG
CAACGGAGCACCACCGGCTACAACGCCAAACGCCTCAACATGATACTGGCCGTTCTGGAAAAACGCGCCGGATTCCGCCT
CGGCGCCAAAGACGTCTTCCTCAACGTCACCGGCGGCATCAGCGTGGATGATCCGGCGATTGACCTGGCCGTGGTGGCTG
CGATACTTTCCTCAAACGAGGATATCGCGGTGGGGAAAGACTTCTGTTTTGCCGGGGAGGTCGGCCTTTCGGGCGAAATC
AGGCCCGTAAACCGCGTCGACCAACGCATACAGGAAGCGGAAAAACTGGGCTTCTCGACCATTTTCATATCCAAATACAA
TAAAGTATCTTTGAAGGATACCCTGATTCGCGTGCACCTCGTGAGCAATATCGAGGAAGTAGCCAGCGTTCTCTTCGGTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(334-427)

AAA domain (AAA_25)

(82-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.578

100

0.49
  radA Streptococcus pneumoniae D39

48.578

100

0.49
  radA Streptococcus pneumoniae R6

48.578

100

0.49
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.49
  radA Streptococcus mitis SK321

48.352

100

0.486
  radA Streptococcus mitis NCTC 12261

48.352

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

49.07

94.923

0.466