Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MLD56_RS22710 Genome accession   NZ_CP092831
Coordinates   5110899..5112272 (-) Length   457 a.a.
NCBI ID   WP_029514504.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZBSF16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5105899..5117272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS22685 (MLD56_22685) ispF 5106496..5106972 (-) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MLD56_RS22690 (MLD56_22690) ispD 5106969..5107667 (-) 699 WP_029514501.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MLD56_RS22695 (MLD56_22695) - 5107738..5108823 (-) 1086 WP_029514502.1 PIN/TRAM domain-containing protein -
  MLD56_RS22700 (MLD56_22700) pssA 5109009..5109755 (-) 747 WP_029514503.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MLD56_RS22705 (MLD56_22705) disA 5109810..5110886 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  MLD56_RS22710 (MLD56_22710) radA 5110899..5112272 (-) 1374 WP_029514504.1 DNA repair protein RadA Machinery gene
  MLD56_RS22715 (MLD56_22715) clpC 5112513..5114957 (-) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  MLD56_RS22720 (MLD56_22720) - 5115002..5116066 (-) 1065 WP_029514505.1 protein arginine kinase -
  MLD56_RS22725 (MLD56_22725) - 5116095..5116619 (-) 525 WP_029514506.1 UvrB/UvrC motif-containing protein -
  MLD56_RS22730 (MLD56_22730) - 5116689..5117153 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49214.89 Da        Isoelectric Point: 6.7620

>NTDB_id=660676 MLD56_RS22710 WP_029514504.1 5110899..5112272(-) (radA) [Paenibacillus peoriae strain ZBSF16]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKEARILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=660676 MLD56_RS22710 WP_029514504.1 5110899..5112272(-) (radA) [Paenibacillus peoriae strain ZBSF16]
ATGGCTAAAGTGAAAACTAAGTTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACAGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGCGGTAAAGAAGCACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAGCTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGACTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAATTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGAGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCGCGTTTGTTGGAACATATGGTTGATTGTGTACTTTATTTT
GAAGGAGAGCGTCACCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTTGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTTTCGAATCCTTCTGAACTATTCCTGTCTGAACGGCCACTGGGGGTGGCAG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACACATTTT
CCATCTCCACGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACAAAGCCGTATGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGTTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTAGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58