Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG723_RS21135 Genome accession   NZ_CP108439
Coordinates   4539523..4540122 (+) Length   199 a.a.
NCBI ID   WP_030152816.1    Uniprot ID   A0A5J6J6A5
Organism   Streptomyces sp. NBC_01278     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4534523..4545122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG723_RS21115 (OG723_21140) - 4534745..4537264 (+) 2520 WP_328763295.1 glycosyltransferase -
  OG723_RS21120 (OG723_21145) - 4537361..4538011 (+) 651 WP_327284570.1 hypothetical protein -
  OG723_RS21125 (OG723_21150) - 4538117..4538872 (-) 756 WP_327284571.1 SLATT domain-containing protein -
  OG723_RS21130 (OG723_21155) - 4539139..4539483 (+) 345 WP_327284572.1 YbaB/EbfC family nucleoid-associated protein -
  OG723_RS21135 (OG723_21160) recR 4539523..4540122 (+) 600 WP_030152816.1 recombination mediator RecR Machinery gene
  OG723_RS21140 (OG723_21165) - 4540115..4540789 (+) 675 WP_327284573.1 DUF5063 domain-containing protein -
  OG723_RS21145 (OG723_21170) - 4541016..4542290 (+) 1275 WP_327284574.1 aspartate kinase -
  OG723_RS21150 (OG723_21175) - 4542287..4543363 (+) 1077 WP_327284575.1 aspartate-semialdehyde dehydrogenase -
  OG723_RS21155 (OG723_21180) - 4543735..4544378 (+) 644 Protein_4161 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21928.25 Da        Isoelectric Point: 5.0142

>NTDB_id=660676 OG723_RS21135 WP_030152816.1 4539523..4540122(+) (recR) [Streptomyces sp. NBC_01278]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660676 OG723_RS21135 WP_030152816.1 4539523..4540122(+) (recR) [Streptomyces sp. NBC_01278]
GTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCCACCGACGTCCGGCGTCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCCGTGTGCGGGAACGTGGCCCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGTGACACCACGGTC
ATCTGTGTGGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGAGAGTTCCGGGGCAGGTACCACGTCCTCGG
TGGCGCGATCAGCCCGATCGAGGGCGTCGGACCGGACGACCTGCGCATCCGAGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6J6A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472