Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MLD56_RS21800 Genome accession   NZ_CP092831
Coordinates   4903346..4904299 (-) Length   317 a.a.
NCBI ID   WP_029519270.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZBSF16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4898346..4909299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS21770 (MLD56_21770) - 4898348..4898674 (-) 327 WP_025721930.1 thioredoxin family protein -
  MLD56_RS21775 (MLD56_21775) - 4898828..4899739 (-) 912 WP_029519260.1 aldo/keto reductase -
  MLD56_RS21780 (MLD56_21780) - 4899884..4900627 (-) 744 WP_029519262.1 alpha/beta hydrolase-fold protein -
  MLD56_RS21785 (MLD56_21785) - 4900661..4901641 (-) 981 WP_029519263.1 siderophore ABC transporter substrate-binding protein -
  MLD56_RS21790 (MLD56_21790) - 4901654..4902412 (-) 759 WP_029519266.1 ABC transporter ATP-binding protein -
  MLD56_RS21795 (MLD56_21795) - 4902406..4903356 (-) 951 WP_029519268.1 iron chelate uptake ABC transporter family permease subunit -
  MLD56_RS21800 (MLD56_21800) ceuB 4903346..4904299 (-) 954 WP_029519270.1 ABC transporter permease Machinery gene
  MLD56_RS21805 (MLD56_21805) - 4904623..4905300 (+) 678 WP_029519271.1 response regulator transcription factor -
  MLD56_RS21810 (MLD56_21810) - 4905297..4906214 (+) 918 WP_029519273.1 HAMP domain-containing sensor histidine kinase -
  MLD56_RS21815 (MLD56_21815) - 4906323..4907000 (+) 678 WP_241113422.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34776.78 Da        Isoelectric Point: 9.9012

>NTDB_id=660675 MLD56_RS21800 WP_029519270.1 4903346..4904299(-) (ceuB) [Paenibacillus peoriae strain ZBSF16]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALTYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=660675 MLD56_RS21800 WP_029519270.1 4903346..4904299(-) (ceuB) [Paenibacillus peoriae strain ZBSF16]
ATGAAATTGCGCTATTTAATACTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTTTCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGCTTGATGTTTGGAGGTATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTATGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGCTGACGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCGAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTCGGGTTAGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCTAATCTCGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTCTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505