Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MLD56_RS15850 Genome accession   NZ_CP092831
Coordinates   3612400..3612840 (-) Length   146 a.a.
NCBI ID   WP_029517685.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain ZBSF16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3607400..3617840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD56_RS15835 (MLD56_15835) - 3608697..3610322 (-) 1626 WP_029517683.1 response regulator -
  MLD56_RS15840 (MLD56_15840) - 3610297..3612117 (-) 1821 WP_029517684.1 sensor histidine kinase -
  MLD56_RS15845 (MLD56_15845) - 3612231..3612407 (+) 177 WP_176715684.1 hypothetical protein -
  MLD56_RS15850 (MLD56_15850) nucA/comI 3612400..3612840 (-) 441 WP_029517685.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MLD56_RS15855 (MLD56_15855) - 3612981..3613175 (+) 195 WP_029517686.1 hypothetical protein -
  MLD56_RS15860 (MLD56_15860) - 3613561..3613863 (+) 303 WP_013310964.1 hypothetical protein -
  MLD56_RS15865 (MLD56_15865) - 3613938..3615824 (-) 1887 WP_029517687.1 hypothetical protein -
  MLD56_RS15870 (MLD56_15870) - 3615945..3616367 (-) 423 WP_029517688.1 hypothetical protein -
  MLD56_RS15875 (MLD56_15875) - 3616384..3617052 (-) 669 WP_029517689.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16010.22 Da        Isoelectric Point: 9.3698

>NTDB_id=660668 MLD56_RS15850 WP_029517685.1 3612400..3612840(-) (nucA/comI) [Paenibacillus peoriae strain ZBSF16]
MKKKLLSFIALVLLAAGAYWFEGGNLLTKITGENPPSSAAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQN
RKHSLTGVPTRKGYDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVIK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=660668 MLD56_RS15850 WP_029517685.1 3612400..3612840(-) (nucA/comI) [Paenibacillus peoriae strain ZBSF16]
TTGAAGAAAAAGTTGCTAAGTTTTATAGCTTTAGTTCTGCTAGCTGCGGGCGCGTACTGGTTTGAAGGAGGCAATCTTCT
TACGAAAATAACAGGAGAGAACCCGCCTTCCTCGGCGGCTCAGGTAACGCTGCAATTCCCGTCAGGTCGTTACCCTGAAA
CGGCGCAGCATATTAAGGAAGCCATTCAGGCGGGAAAATCACCAGTATGCACAATTGACCGTGAAGGAGCCGAGCAAAAT
CGCAAGCATTCGCTTACAGGTGTTCCCACTCGTAAGGGATACGATCGTGATGAATGGCCGATGGCTATGTGTTCAGAAGG
AGGCAAAGGTGCAAATGTCAAATACATAGCCCCTAAGGATAATCGTGGGGCAGGATCATGGGTTAGTCATCAATTGGATG
AGTATGAGGATGGAACTCGTGTAAAATTCGTTATTAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.269

71.233

0.486